GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000873-TA|BGIBMGA000873-PA|undefined
         (83 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   0.51 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    19   8.3  

>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.0 bits (47), Expect = 0.51
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 44  EHSYSLHSDVESAPPSPHHTKVDA 67
           E S+S H  V     SPHH   D+
Sbjct: 207 ERSFSEHDSVMLGEISPHHEYYDS 230


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 5/17 (29%), Positives = 13/17 (76%)

Query: 65  VDAIFMSAPYIQIGIKL 81
           +  +F++  YI+IG+++
Sbjct: 216 IPMVFIAVLYIRIGLRI 232


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,509
Number of Sequences: 429
Number of extensions: 915
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 83
length of database: 140,377
effective HSP length: 47
effective length of query: 36
effective length of database: 120,214
effective search space:  4327704
effective search space used:  4327704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.8 bits)
S2: 37 (19.0 bits)