Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000873-TA|BGIBMGA000873-PA|undefined
(83 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g28660.1 68415.m03484 copper-binding family protein similar t... 29 0.51
At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to ... 27 2.1
At2g22570.2 68415.m02676 isochorismatase hydrolase family protei... 27 2.1
At2g22570.1 68415.m02675 isochorismatase hydrolase family protei... 27 2.1
At3g05630.1 68416.m00626 phospholipase D, putative (PLDP2) ident... 26 2.7
At5g19330.1 68418.m02303 armadillo/beta-catenin repeat family pr... 26 3.6
At1g75010.1 68414.m08709 MORN (Membrane Occupation and Recogniti... 26 3.6
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 26 3.6
At3g47660.1 68416.m05188 regulator of chromosome condensation (R... 25 4.7
At1g08750.3 68414.m00974 GPI-anchor transamidase, putative simil... 25 6.3
At1g08750.2 68414.m00973 GPI-anchor transamidase, putative simil... 25 6.3
At1g08750.1 68414.m00972 GPI-anchor transamidase, putative simil... 25 6.3
At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to ... 25 8.3
>At2g28660.1 68415.m03484 copper-binding family protein similar to
copper homeostasis factor gi:3168840 from Arabidopsis
thaliana; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 265
Score = 28.7 bits (61), Expect = 0.51
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 2 HDILDEDERSDWLIERDSKSGVVLHDRLMTDAALGAAAPIKTEHSYSLHSDVESAPPS 59
H L D++ WL SK ++ DR +T +A +++ + S S+ ++V S PS
Sbjct: 123 HKSLKGDDKDLWLSSDRSKDLILYRDRNVTSSASSSSSSSSSSFSSSV-TNVSSPAPS 179
>At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to
embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
supporting cDNA gi|14276049|dbj|AB053171.1|
Length = 626
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 3 DILDEDERSDWLIERDSKSGVVLHDRLMTDAALGAAAPIKTEHSYSLHSDVESAPPSPHH 62
D +D +++ + R KS V R LG KT+ ++S+ S+ PP H+
Sbjct: 379 DDVDPKQQTFFFSRRRQKSQV-RSSRQGPHLGLGCEVLDKTDDAHSVRSEKSRIPPGKHY 437
Query: 63 TKV 65
++
Sbjct: 438 ERI 440
>At2g22570.2 68415.m02676 isochorismatase hydrolase family protein
contains Pfam profile PF00857: isochorismatase family
protein
Length = 175
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 8 DERSDWLIERDSKSGVVLHDRLMTDAALGAAAPIKTEHSYSLHSDVESA 56
DE ++ RDS G+V+ D + +G+ T+H+ + VE +
Sbjct: 18 DEEEPLILNRDSSVGLVIVDVVNGFCTIGSGNMAPTKHNEQISKMVEES 66
>At2g22570.1 68415.m02675 isochorismatase hydrolase family protein
contains Pfam profile PF00857: isochorismatase family
protein
Length = 244
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 8 DERSDWLIERDSKSGVVLHDRLMTDAALGAAAPIKTEHSYSLHSDVESA 56
DE ++ RDS G+V+ D + +G+ T+H+ + VE +
Sbjct: 18 DEEEPLILNRDSSVGLVIVDVVNGFCTIGSGNMAPTKHNEQISKMVEES 66
>At3g05630.1 68416.m00626 phospholipase D, putative (PLDP2)
identical to SP|Q9M9W8 Phospholipase D p2 (EC 3.1.4.4)
(AtPLDp2) (Phospholipase D2 PHOX and PX containing
domain) (Phospholipase D zeta 2) (PLDzeta2) {Arabidopsis
thaliana}; similar to phospholipase D GB:BAA24577 from
[Rattus norvegicus]; contains Pfam profile: PF00614
phospholipase D, PF00169 PH domain, PF00787 PX domain
Length = 1046
Score = 26.2 bits (55), Expect = 2.7
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 17 RDSKSGVVLHDRLMTDAALGAAAPIKTEHSYSLHSDVESAPPSPHHTKVDAI 68
RDS+ GVV+ D+ ++++ + + SYSL + S H ++ I
Sbjct: 879 RDSEIGVVIEDKEFVESSMNGMKWMAGKFSYSLRCSLWSEHLGLHAGEIQKI 930
>At5g19330.1 68418.m02303 armadillo/beta-catenin repeat family
protein / BTB/POZ domain-containing protein contains
armadillo/beta-catenin-like repeats, Pfam:PF00514 and a
BTB/POZ domain, Pfam:PF00651
Length = 710
Score = 25.8 bits (54), Expect = 3.6
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 7 EDERSDWLIERDSKSGVVLHDRLMTDAAL-GAAAPIKTEHSYSLHSDVESAPPSP 60
ED+R+ ++ + + + L L T L GAAA K + S V++APPSP
Sbjct: 470 EDQRTIFIDDNGLELLLGLLGSLNTKQQLDGAAALYKLANKSMALSPVDAAPPSP 524
>At1g75010.1 68414.m08709 MORN (Membrane Occupation and Recognition
Nexus) repeat-containing protein
/phosphatidylinositol-4-phosphate 5-kinase-related low
similarity to phosphatidylinositol-4-phosphate 5-kinase
AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
Pfam profile PF02493: MORN repeat
Length = 712
Score = 25.8 bits (54), Expect = 3.6
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 13 WLIERDSKSGVVLHDRL-MTDAALGAAAPIK 42
W I +DS G+VL RL D AL PI+
Sbjct: 106 WSISKDSSGGLVLQQRLNHQDNALKTMNPIE 136
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 25.8 bits (54), Expect = 3.6
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 16 ERDSKSGVVLHDRLMTDAALGAA-APIKTEHSYSLHSDVESAPPSPHHTKV 65
E SK+ + ++ +++ + + + A K +H L + + PPSPH +
Sbjct: 274 EEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQFNNPPPSPHQQPI 324
>At3g47660.1 68416.m05188 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1)
Length = 951
Score = 25.4 bits (53), Expect = 4.7
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 5 LDEDERSDWL------IERDSKSGVVLHDRLMTDAALGAAAPIKTEHSYSLHSDVESAPP 58
LD+DE WL + R++ S +VLH R + A +++S S V S
Sbjct: 102 LDKDEAEFWLTTLRALLSRNNSSALVLHSRSRSLAPENGEQSSSSQNSKSNIRSVSSDTS 161
Query: 59 SPHHTK 64
H K
Sbjct: 162 YEEHAK 167
>At1g08750.3 68414.m00974 GPI-anchor transamidase, putative similar
to SP|P49018 GPI-anchor transamidase (EC 3.-.-.-) (GPI
transamidase) {Saccharomyces cerevisiae}; contains Pfam
profile PF01650: Peptidase C13 family
Length = 388
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 14 LIERDSKSGVVLHDRLMTDAALGAAAPIKTEHSYSLHSD 52
+I D+ L ++L + L + +K E+SYS H D
Sbjct: 182 MIMVDTCQAATLFNQLQSPGVLAIGSSLKGENSYSHHLD 220
>At1g08750.2 68414.m00973 GPI-anchor transamidase, putative similar
to SP|P49018 GPI-anchor transamidase (EC 3.-.-.-) (GPI
transamidase) {Saccharomyces cerevisiae}; contains Pfam
profile PF01650: Peptidase C13 family
Length = 388
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 14 LIERDSKSGVVLHDRLMTDAALGAAAPIKTEHSYSLHSD 52
+I D+ L ++L + L + +K E+SYS H D
Sbjct: 182 MIMVDTCQAATLFNQLQSPGVLAIGSSLKGENSYSHHLD 220
>At1g08750.1 68414.m00972 GPI-anchor transamidase, putative similar
to SP|P49018 GPI-anchor transamidase (EC 3.-.-.-) (GPI
transamidase) {Saccharomyces cerevisiae}; contains Pfam
profile PF01650: Peptidase C13 family
Length = 388
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 14 LIERDSKSGVVLHDRLMTDAALGAAAPIKTEHSYSLHSD 52
+I D+ L ++L + L + +K E+SYS H D
Sbjct: 182 MIMVDTCQAATLFNQLQSPGVLAIGSSLKGENSYSHHLD 220
>At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to
embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
supporting cDNA gi|14276049|dbj|AB053171.1|
Length = 631
Score = 24.6 bits (51), Expect = 8.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 35 LGAAAPIKTEHSYSLHSDVESAPPSPHHTKV 65
LG KT+ ++S+ S+ PP H+ ++
Sbjct: 415 LGCEVLDKTDDAHSVRSEKSRIPPGKHYERI 445
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.132 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,163
Number of Sequences: 28952
Number of extensions: 63243
Number of successful extensions: 191
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 13
length of query: 83
length of database: 12,070,560
effective HSP length: 62
effective length of query: 21
effective length of database: 10,275,536
effective search space: 215786256
effective search space used: 215786256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)
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