GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000871-TA|BGIBMGA000871-PA|IPR000008|C2
calcium-dependent membrane targeting, IPR008973|C2
calcium/lipid-binding region, CaLB
         (493 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   2.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 46  KSHGSPSEMLISKEQCRVQ-PLNSDTRA-ATSLPHARLTRTPSISSQSSLDSATSRATSH 103
           K      +++ SK   +   P    T A    L   R++  PSI ++S L S +S   + 
Sbjct: 340 KKESDDKKVISSKSGSKANSPFPGSTEADIIELQDLRMSPLPSIRNRSGLVSGSSTPGTG 399

Query: 104 RGSSPAIRTFAPDGRTLEAGGVN 126
           R   PA   F P  R       N
Sbjct: 400 REHDPA--KFPPSFRISRVAAYN 420


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 54  MLISKEQCRVQPLNSDTRAATSLPHARLTRTPSISSQSSLDSATSRATSHRGSSPAIRTF 113
           ++IS+   R+ P      +  S P      T S  SQS++ +   + +  R S    R +
Sbjct: 370 IIISEPTERISPYGYPIGSGGSFPSLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLY 429

Query: 114 AP 115
            P
Sbjct: 430 NP 431


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,357
Number of Sequences: 429
Number of extensions: 3448
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 2
length of query: 493
length of database: 140,377
effective HSP length: 60
effective length of query: 433
effective length of database: 114,637
effective search space: 49637821
effective search space used: 49637821
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)