GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000870-TA|BGIBMGA000870-
PA|IPR002202|Hydroxymethylglutaryl-coenzyme A reductase
         (157 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0179 - 41814886-41815074,41815172-41815222,41815365-418154...    29   1.7  
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142...    29   2.3  
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112...    27   5.3  
06_03_1285 - 28993305-28993442,28993559-28993798,28993881-289939...    27   7.0  
01_04_0038 - 15339047-15339230,15339683-15339741,15340031-153401...    27   7.0  
03_06_0075 - 31481395-31481452,31481675-31481964,31482068-314821...    27   9.2  

>01_07_0179 -
          41814886-41815074,41815172-41815222,41815365-41815469,
          41815852-41815945,41816056-41816150,41816581-41816700,
          41816737-41816832,41817272-41817569,41817777-41817853,
          41818932-41819447
          Length = 546

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 15 PWADPLAPGGTPW---EYDYEEIHKNFETTTIGRVARPE 50
          P ADP + GG+P    E + E + + F+    GR++R E
Sbjct: 22 PQADPASGGGSPAPTPEEEMERVFRKFDANGDGRISRSE 60


>03_02_0735 +
           10811326-10812342,10813199-10813555,10813962-10814225,
           10814894-10815010,10815796-10815944,10816315-10816606,
           10816681-10816845,10817106-10817357
          Length = 870

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 4   DRDLMVAEIDKPWADPLAPGGTPWEYDYEEIHKNFETTTIGRVARP 49
           D+D+++  +D+     +  G   W  D E++H N E   I +V  P
Sbjct: 465 DKDIILEGLDQI-EKLIQDGKFEWRTDREDVHMNIEAALIEKVGEP 509


>02_05_0075 -
           25610386-25610508,25610529-25610583,25610801-25611240,
           25612951-25613619,25614551-25615870
          Length = 868

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 13  DKPWADPLAPGGTPWEYDYEEIH 35
           D+ W     PG + W+YD +  H
Sbjct: 390 DEAWFSAWGPGSSVWDYDMDSAH 412


>06_03_1285 -
           28993305-28993442,28993559-28993798,28993881-28993961,
           28994370-28994429,28994523-28994628,28994861-28994921,
           28995198-28995246,28995475-28995599,28995809-28995947,
           28996432-28996503,28996615-28996742,28997037-28997136,
           28997757-28997897,28998116-28998232,28998505-28998609,
           28999037-28999153
          Length = 592

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 92  WRKPRRRQLPLLAPMDI 108
           W  P RR LPLLAP ++
Sbjct: 24  WAPPLRRNLPLLAPHEV 40


>01_04_0038 -
           15339047-15339230,15339683-15339741,15340031-15340160,
           15340248-15340498,15340632-15341225,15342050-15342511
          Length = 559

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 4   DRDLMVAEIDKPWADPLAPGGTPWEYDYEEIHKNFETTTIGRVAR 48
           DR + V E+D P A PL       E   + +H    T TIG VAR
Sbjct: 117 DRVIEVGEVD-PAAYPLPKTKLTLENLRDVVHLRSRTNTIGAVAR 160


>03_06_0075 -
           31481395-31481452,31481675-31481964,31482068-31482141,
           31483099-31483351
          Length = 224

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 32  EEIHKNFETTTIGRVARPEAMTAPRGVPAWDE 63
           E+ H +  + ++G+ A+P     P G+P   E
Sbjct: 147 EKSHNSLSSNSLGQAAKPRPFPVPDGLPKTQE 178


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.138    0.457 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,947,818
Number of Sequences: 37544
Number of extensions: 126786
Number of successful extensions: 214
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 210
Number of HSP's gapped (non-prelim): 6
length of query: 157
length of database: 14,793,348
effective HSP length: 76
effective length of query: 81
effective length of database: 11,940,004
effective search space: 967140324
effective search space used: 967140324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)