GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000870-TA|BGIBMGA000870-
PA|IPR002202|Hydroxymethylglutaryl-coenzyme A reductase
         (157 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28497| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_13359| Best HMM Match : DMAP1 (HMM E-Value=0)                       27   9.5  

>SB_28497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 98  RQLPLLAPMDIGHNLKQLKADI 119
           R  P LAP D  H  KQLKA +
Sbjct: 32  RDSPSLAPSDTTHGYKQLKAKL 53


>SB_13359| Best HMM Match : DMAP1 (HMM E-Value=0)
          Length = 535

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 98  RQLPLLAPMDIGHNLKQLKADI 119
           R  P LAP D  H  KQLKA +
Sbjct: 155 RDSPSLAPSDTTHGYKQLKAKL 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.138    0.457 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,393,951
Number of Sequences: 59808
Number of extensions: 133065
Number of successful extensions: 162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 2
length of query: 157
length of database: 16,821,457
effective HSP length: 76
effective length of query: 81
effective length of database: 12,276,049
effective search space: 994359969
effective search space used: 994359969
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)