GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000869-TA|BGIBMGA000869-PA|undefined
         (67 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    27   0.40 
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   0.53 
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    22   8.7  

>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 26.6 bits (56), Expect = 0.40
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 21  LKHVVSYDSQSNRLDKLTHACPRGIQAAYIEFQSV 55
           L  +   +S    LDKL H   RGI+ A IE  +V
Sbjct: 773 LAQIRHLESDKMELDKLVHHLNRGIEEANIEENAV 807


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 0.53
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 21  LKHVVSYDSQSNRLDKLTHAC 41
           L HVV +   S RL++LT AC
Sbjct: 879 LTHVVMFVEDSTRLEQLTKAC 899


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 12  LITNV-MFLDLKHVVSYDSQSN 32
           L+T+   FL+LKH++   S SN
Sbjct: 471 LVTDYDFFLELKHLIDISSLSN 492


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.332    0.143    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 273,397
Number of Sequences: 5004
Number of extensions: 8219
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 3
length of query: 67
length of database: 2,362,478
effective HSP length: 47
effective length of query: 20
effective length of database: 2,127,290
effective search space: 42545800
effective search space used: 42545800
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (22.0 bits)
S2: 45 (22.2 bits)