GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000869-TA|BGIBMGA000869-PA|undefined
         (67 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100...    25   5.7  

>06_03_1306 +
           29208882-29209547,29209641-29209854,29209947-29210023,
           29210132-29210171,29210254-29210323,29210419-29210488,
           29210747-29210995,29212810-29214700,29215458-29215771
          Length = 1196

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 11  ILITNVMFLDLKHVVSYDSQSNRLDKLTHACPRGIQAAYIEFQSVLINSEFKF 63
           +L+ N+  LD  + V   ++       +HA P  ++  YI+   +L +S  KF
Sbjct: 849 LLLENIAALDHVNEVLIKAREITRFIYSHAVPMELKGKYIQGGEILSSSNLKF 901


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.332    0.143    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,471,753
Number of Sequences: 37544
Number of extensions: 38744
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 92
Number of HSP's gapped (non-prelim): 1
length of query: 67
length of database: 14,793,348
effective HSP length: 47
effective length of query: 20
effective length of database: 13,028,780
effective search space: 260575600
effective search space used: 260575600
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (22.0 bits)
S2: 51 (24.6 bits)