GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000869-TA|BGIBMGA000869-PA|undefined
         (67 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38713| Best HMM Match : p450 (HMM E-Value=0)                        27   1.6  
SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.6  
SB_13009| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.6  
SB_13447| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.5  
SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   6.5  

>SB_38713| Best HMM Match : p450 (HMM E-Value=0)
          Length = 500

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 2   YLYAFVFDVILITNVMFLDLKHVVSYDS 29
           YL AF+ +V+ IT VM L ++H+   D+
Sbjct: 356 YLEAFIAEVLRITGVMPLAIQHLAMADT 383


>SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 11  ILITNVMFLDLKHVVSYDSQSNRLDKLTHACPR 43
           +++TN+    ++  VS +S+ N  DK THA  R
Sbjct: 646 VVVTNIAISVVQQEVSQESKDNTHDKPTHAALR 678


>SB_13009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 33  RLDKLTHACPRGIQAAYIEFQSVLINSEFKF 63
           RL  L H CP+  +A  IE   VL N  F +
Sbjct: 186 RLSPLNHGCPQQTEALAIESHLVLSNRGFGY 216


>SB_13447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 2  YLYAFVFDVILITNVMFLDLKHVVSYDSQSNRLDKLTHACPRGIQAAYIEFQSVLINSEF 61
          +L  F F V ++T ++ +D+  V S     + LDK T+     +    +    + +N   
Sbjct: 28 WLIFFCFAVTIVTKMLRVDVVFVPSCVDAESSLDKRTYVWCTAVVGVRLICDKICLNFSM 87

Query: 62 K 62
          K
Sbjct: 88 K 88


>SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1766

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 22   KHVVSYDSQSNRLDKLTHACPRGIQAAYIEFQ 53
            ++++    QS ++    H C  G+ AAY++ Q
Sbjct: 1131 RYIIRTFHQSGKIHHPHHLCEGGLSAAYVDSQ 1162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.332    0.143    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,744,229
Number of Sequences: 59808
Number of extensions: 47495
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 6
length of query: 67
length of database: 16,821,457
effective HSP length: 46
effective length of query: 21
effective length of database: 14,070,289
effective search space: 295476069
effective search space used: 295476069
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (22.0 bits)
S2: 52 (25.0 bits)