GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000869-TA|BGIBMGA000869-PA|undefined
         (67 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70035-3|CAA93863.1|  435|Caenorhabditis elegans Hypothetical pr...    25   5.0  
AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine re...    25   5.0  
AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine re...    25   5.0  
Z81073-8|CAB03030.2|  583|Caenorhabditis elegans Hypothetical pr...    25   6.5  
Z79752-7|CAC70084.1|  583|Caenorhabditis elegans Hypothetical pr...    25   6.5  
AF026201-1|AAB71239.1|  113|Caenorhabditis elegans Hypothetical ...    25   6.5  
Z98877-10|CAB63406.1|  314|Caenorhabditis elegans Hypothetical p...    25   8.7  

>Z70035-3|CAA93863.1|  435|Caenorhabditis elegans Hypothetical
           protein R09D1.3 protein.
          Length = 435

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 5/45 (11%)

Query: 26  SYDSQSNRLDKLTHACPRGIQAAY---IEFQSVLINSEFKFFELR 67
           S D   N+L KLTHA    +   Y   ++F++++  +E KFF L+
Sbjct: 87  STDISKNQLAKLTHAVFAFVDIKYDGTLQFKNLI--TEQKFFSLK 129


>AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform a protein.
          Length = 342

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 5   AFVFDVILITNVMFLDLKHVVSYDSQSNR 33
           AFVF +I++T+VM   L   +SY   + R
Sbjct: 273 AFVFHIIMVTDVMSTPLIVQISYLCNNKR 301


>AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform b protein.
          Length = 324

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 5   AFVFDVILITNVMFLDLKHVVSYDSQSNR 33
           AFVF +I++T+VM   L   +SY   + R
Sbjct: 255 AFVFHIIMVTDVMSTPLIVQISYLCNNKR 283


>Z81073-8|CAB03030.2|  583|Caenorhabditis elegans Hypothetical
           protein F30F8.2 protein.
          Length = 583

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 31  SNRLDKLTHACPRGIQAAYIEFQSVLINSE 60
           ++R D + HAC + + + YI F + +  SE
Sbjct: 282 ADRFDFMIHACRKFVGSGYIGFDNSVFLSE 311


>Z79752-7|CAC70084.1|  583|Caenorhabditis elegans Hypothetical
           protein F30F8.2 protein.
          Length = 583

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 31  SNRLDKLTHACPRGIQAAYIEFQSVLINSE 60
           ++R D + HAC + + + YI F + +  SE
Sbjct: 282 ADRFDFMIHACRKFVGSGYIGFDNSVFLSE 311


>AF026201-1|AAB71239.1|  113|Caenorhabditis elegans Hypothetical
           protein D1079.1 protein.
          Length = 113

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 2   YLYAFVFDVILITNVMFLDLKHVVSYDSQSNRLDKLT 38
           +LY FV D  ++T VM   ++  + Y   +N  +KLT
Sbjct: 67  FLYNFVMDSNVVTLVMSRIVQLSIPYTLIANSAEKLT 103


>Z98877-10|CAB63406.1|  314|Caenorhabditis elegans Hypothetical
           protein Y69H2.9 protein.
          Length = 314

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 20  DLKHVVSYDSQSNRLDKLTHAC---PRGIQAAYIEF 52
           ++K V+S     N L+K T AC    R + A  +EF
Sbjct: 196 EVKPVISLSEMENVLNKSTIACSESKRAVNACVVEF 231


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.332    0.143    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,404,888
Number of Sequences: 27539
Number of extensions: 40139
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 8
length of query: 67
length of database: 12,573,161
effective HSP length: 47
effective length of query: 20
effective length of database: 11,278,828
effective search space: 225576560
effective search space used: 225576560
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (22.0 bits)
S2: 51 (24.6 bits)