GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000869-TA|BGIBMGA000869-PA|undefined
         (67 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    19   5.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    19   6.7  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 19.0 bits (37), Expect = 5.1
 Identities = 9/36 (25%), Positives = 22/36 (61%), Gaps = 3/36 (8%)

Query: 1   MYLYAFVFDVILITNVMFLDLKHVVSYDSQSNRLDK 36
           M+++A + + ++   V  LDL+  + YD Q++ + +
Sbjct: 271 MFVFAALGEFVV---VKVLDLRSQLEYDLQTSIMSR 303


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 18.6 bits (36), Expect = 6.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 43  RGIQAAYIEFQSVLINSEF 61
           R I A YI  ++++   EF
Sbjct: 626 REIDAGYITIEAIIGGGEF 644


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.332    0.143    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,095
Number of Sequences: 429
Number of extensions: 419
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 67
length of database: 140,377
effective HSP length: 45
effective length of query: 22
effective length of database: 121,072
effective search space:  2663584
effective search space used:  2663584
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.6 bits)
S2: 35 (18.2 bits)