GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000869-TA|BGIBMGA000869-PA|undefined
         (67 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25910.1 68415.m03109 3'-5' exonuclease domain-containing pro...    25   6.2  
At1g13195.1 68414.m01530 zinc finger (C3HC4-type RING finger) fa...    25   6.2  

>At2g25910.1 68415.m03109 3'-5' exonuclease domain-containing
           protein / K homology domain-containing protein / KH
           domain-containing protein contains Pfam profiles
           PF01612: 3'-5' exonuclease, PF00013: KH domain
          Length = 341

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 30  QSNRLDKLTHACPRGIQAAYIEF 52
           +SN + K+ H C R  +A Y +F
Sbjct: 105 ESNYITKVIHDCKRDSEALYFQF 127


>At1g13195.1 68414.m01530 zinc finger (C3HC4-type RING finger)
           family protein similar to MTD2 [Medicago truncatula]
           GI:9294812; contains Pfam profile PF00097: Zinc finger,
           C3HC4 type (RING finger)
          Length = 260

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 18  FLDLKHVVSYDSQSNRLDKLTHACPRGIQAAYIEFQSVLINS 59
           +L+L HV+ Y  QS+   KLT     G +A   EF  V++ S
Sbjct: 77  YLNLFHVLVYKVQSDGQPKLT---THGRKATISEFYGVILPS 115


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.332    0.143    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,276,619
Number of Sequences: 28952
Number of extensions: 35110
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 2
length of query: 67
length of database: 12,070,560
effective HSP length: 47
effective length of query: 20
effective length of database: 10,709,816
effective search space: 214196320
effective search space used: 214196320
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (22.0 bits)
S2: 51 (24.6 bits)