GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000868-TA|BGIBMGA000868-PA|IPR001128|Cytochrome P450,
IPR002401|E-class P450, group I
         (146 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    50   1e-07
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    36   0.003
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    27   0.87 
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    27   0.87 
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    25   6.1  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    25   6.1  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    25   6.1  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 50.0 bits (114), Expect = 1e-07
 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 1   MKVLELVIKESLRMYPSVPLIERLITKDAEVG-GLKLSKGTSVVLNIFQMHRNPEVFEKP 59
           M     V+KE LR+ P V ++   + K   +     + K   V+  ++    + +V+ +P
Sbjct: 369 MTYTRAVVKECLRLRPPVLMVPYRVKKAFPITPDYTVPKDAMVIPTLYGALHDSKVYPEP 428

Query: 60  LEFIPERF--DSLEHKNPFSWLAFSAGPRNCIGQKFAM 95
             F P+R+  + L  ++P +W+ F  GP  C+GQ++A+
Sbjct: 429 ETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCLGQRYAV 466


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 35.5 bits (78), Expect = 0.003
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 19/128 (14%)

Query: 1   MKVLELVIKESLRMYPSVPLIERLITKDAEVGGLKLSKGTSVVLNIFQ--MHRNPEVFEK 58
           M +L  VI+E+LR++P +    R + +D  V G K+    +  L           E F  
Sbjct: 336 MPLLNYVIQETLRLHPPIHSHMRKVKRDLPVPGSKIVIPANNYLLAAPGLTATEEEYFTH 395

Query: 59  PLEFIPERFDS----------------LEHKNPFS-WLAFSAGPRNCIGQKFAMMEMKVT 101
             +F P+R++                 L  K   S +L F AG   CIG++FA M +   
Sbjct: 396 ATDFDPKRWNDRVNEDENAEQIDYGYGLVTKGAASPYLPFGAGRHRCIGEQFAYMHLSTI 455

Query: 102 LSTLVRNF 109
           +S  V ++
Sbjct: 456 ISKFVHDY 463


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 27.5 bits (58), Expect = 0.87
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 13  RMYPSVPLIERLITKDAEVGGLKLSKGTSVVLNIFQMHRN-PEVFEKPLEFIPERFDSLE 71
           R+ PS  L+   + KD       L+K    V+ +F++ +  P ++   LEFI +  ++L 
Sbjct: 187 RVEPSTKLLCE-VNKDPFRQLRLLNKTYGFVITLFEIGQTVPSLWNSTLEFIEKYPETLA 245

Query: 72  HKNPFSWLAFSAGPR 86
             N + W++   G +
Sbjct: 246 KNNLWEWISDDNGKK 260


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 27.5 bits (58), Expect = 0.87
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 7   VIKESLRMYPSVPLIERLITKDAEVGGLKLSKGTSVVLNIFQMHRNPEVF 56
           V+KE + +  SVP + R + +  E G   ++     V N+ ++ + P +F
Sbjct: 252 VLKEPIPILSSVPSMNRRMKEVLEEGSKNVTAKIDRVANLLKLAKKPVIF 301


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 17  SVPLIERLITKDAEVGGLKLS--KGTSVVLNIFQMHRNPEVFEKPLEFIPERFDSLEHKN 74
           S P+++ ++ K+A       S  K  SV  N   +H NP         + +  +++EH +
Sbjct: 51  SSPVVQTVVHKEATENPTASSYRKDDSVKQNEKLLHSNPTFKISKPTVLEQPLNAIEHLS 110

Query: 75  PFSWLAFSA 83
           P + L+ SA
Sbjct: 111 PETDLSSSA 119


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 47  FQMHRNPEVFEKPLE 61
           F  HR P++FEK LE
Sbjct: 157 FYYHRKPQLFEKSLE 171


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 45 NIFQMHRNPEVFEKPLEFIPERFDSLEH 72
          ++ +  +N E +EK  +FI +  D L H
Sbjct: 69 SLLEYQQNEEAYEKNFQFIQKLIDDLLH 96


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.138    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 643,024
Number of Sequences: 5004
Number of extensions: 24150
Number of successful extensions: 55
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 7
length of query: 146
length of database: 2,362,478
effective HSP length: 67
effective length of query: 79
effective length of database: 2,027,210
effective search space: 160149590
effective search space used: 160149590
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)