Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000867-TA|BGIBMGA000867-PA|IPR005711|Ribosomal protein
S5, eukaryotic and archaeal form, IPR005324|Ribosomal protein S5,
C-terminal, IPR011070|Globular protein, non-globular alpha/beta
subunit, IPR000851|Ribosomal protein S5, IPR013810|Ribosomal protein
S5, N-terminal
         (261 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   325   3e-90
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    29   0.51 
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    28   1.2  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   8.4  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  325 bits (799), Expect = 3e-90
 Identities = 141/216 (65%), Positives = 179/216 (82%), Gaps = 1/216 (0%)

Query: 44  KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 103
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQ
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86

Query: 104 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 163
           KQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  
Sbjct: 87  KQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTA 146

Query: 164 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTL 223
           +G PHTVP KV+GKCGSVTVRL+PAPRG G+V+APV K+ LQ+AG++DCYT +RGST TL
Sbjct: 147 LGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTL 206

Query: 224 GNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSEF 259
           GNF              LTP+LW + P  ++P  E+
Sbjct: 207 GNFVKAAFAAASLTYGILTPNLWAERPFGQTPIEEY 242


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 102 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWG 161
           V  QTR G+         +G+ NG  G G   ++  + A + +   A  +++ + R Y  
Sbjct: 235 VVNQTRKGKIASMYVLTVVGNRNGVAGFGEGKAESYSLAYKQSCGRAVKNMVYIPR-Y-- 291

Query: 162 NKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGS 219
                  TV   +  K  +V + L   P G G+   P+  ++ + AG++D      GS
Sbjct: 292 ----DKRTVYGVIHKKFHAVRLTLRSRPAGFGLRCNPILHEICRCAGIKDISGEILGS 345


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 142 RGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPK 201
           RG ++L +++ LPV   Y   ++ K   +  ++  + GS+     P      ++      
Sbjct: 384 RGHVVLIQITSLPVGNNYSNEELKKTENLVAQINSEFGSLD--YTPVIHFHQLLDPDEYY 441

Query: 202 KLLQMAGVQDCYTSARGSTGTL 223
            LL +A +  C +S R S  T+
Sbjct: 442 ALLSVANIA-CVSSVRDSMNTM 462


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/41 (26%), Positives = 23/41 (56%)

Query: 45  EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 85
           +D+ EW P++    LV   ++   E  +++    K++E+ID
Sbjct: 241 KDKPEWQPISLKSELVPNEELLGEEYSHIYHTISKKYELID 281


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.139    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 917,577
Number of Sequences: 5004
Number of extensions: 33661
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 4
length of query: 261
length of database: 2,362,478
effective HSP length: 71
effective length of query: 190
effective length of database: 2,007,194
effective search space: 381366860
effective search space used: 381366860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)