Silkworm BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000867-TA|BGIBMGA000867-PA|IPR005711|Ribosomal protein
S5, eukaryotic and archaeal form, IPR005324|Ribosomal protein S5,
C-terminal, IPR011070|Globular protein, non-globular alpha/beta
subunit, IPR000851|Ribosomal protein S5, IPR013810|Ribosomal protein
S5, N-terminal
         (261 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal prot...   388   e-108
U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal prot...   388   e-108
AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p pro...   388   e-108
AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA...   388   e-108
X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml prot...   387   e-108
AY071397-1|AAL49019.1|  407|Drosophila melanogaster RE47909p pro...    32   0.69 
AE014296-3798|ABI31280.1|  407|Drosophila melanogaster CG40049-P...    32   0.69 
AE014296-3797|EAA46075.1|  407|Drosophila melanogaster CG40049-P...    32   0.69 
AE014296-3796|EAA46076.2|  916|Drosophila melanogaster CG40049-P...    32   0.69 
AE014296-2238|AAF49848.1|  954|Drosophila melanogaster CG11274-P...    30   2.8  

>U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  388 bits (955), Expect = e-108
 Identities = 181/216 (83%), Positives = 191/216 (88%)

Query: 44  KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 103
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 104 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 163
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 164 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTL 223
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSAPVPKKLL MAG++DCYTSARGSTGTL
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTL 216

Query: 224 GNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSEF 259
           GNF              LTPDLW+++PL  +PY  +
Sbjct: 217 GNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAY 252


>U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  388 bits (955), Expect = e-108
 Identities = 181/216 (83%), Positives = 191/216 (88%)

Query: 44  KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 103
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 104 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 163
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 164 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTL 223
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSAPVPKKLL MAG++DCYTSARGSTGTL
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTL 216

Query: 224 GNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSEF 259
           GNF              LTPDLW+++PL  +PY  +
Sbjct: 217 GNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAY 252


>AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p
           protein.
          Length = 267

 Score =  388 bits (955), Expect = e-108
 Identities = 181/216 (83%), Positives = 191/216 (88%)

Query: 44  KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 103
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 104 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 163
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 164 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTL 223
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSAPVPKKLL MAG++DCYTSARGSTGTL
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTL 216

Query: 224 GNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSEF 259
           GNF              LTPDLW+++PL  +PY  +
Sbjct: 217 GNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAY 252


>AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA
           protein.
          Length = 267

 Score =  388 bits (955), Expect = e-108
 Identities = 181/216 (83%), Positives = 191/216 (88%)

Query: 44  KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 103
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 104 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 163
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 164 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTL 223
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSAPVPKKLL MAG++DCYTSARGSTGTL
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTL 216

Query: 224 GNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSEF 259
           GNF              LTPDLW+++PL  +PY  +
Sbjct: 217 GNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAY 252


>X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml protein
           S2 protein.
          Length = 267

 Score =  387 bits (952), Expect = e-108
 Identities = 180/216 (83%), Positives = 191/216 (88%)

Query: 44  KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 103
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 104 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 163
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 164 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTL 223
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSAPVP+KLL MAG++DCYTSARGSTGTL
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPRKLLTMAGIEDCYTSARGSTGTL 216

Query: 224 GNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSEF 259
           GNF              LTPDLW+++PL  +PY  +
Sbjct: 217 GNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAY 252


>AY071397-1|AAL49019.1|  407|Drosophila melanogaster RE47909p
           protein.
          Length = 407

 Score = 32.3 bits (70), Expect = 0.69
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 7/112 (6%)

Query: 109 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPH 168
           G++ R+      G+ NG  G     + EV TA+R +   A   ++ +        + +  
Sbjct: 189 GRKRRYSVLSVTGNGNGLAGFATAKAPEVRTALRKSKNRAGQKLINI-------SLCENR 241

Query: 169 TVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 220
           T+        G   +     P G G+V     + + ++ G++D Y    GST
Sbjct: 242 TIFHDFRTDFGKTKIFCFQKPDGYGLVCHRAIQTICKVIGIKDLYAKIEGST 293


>AE014296-3798|ABI31280.1|  407|Drosophila melanogaster CG40049-PC,
           isoform C protein.
          Length = 407

 Score = 32.3 bits (70), Expect = 0.69
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 7/112 (6%)

Query: 109 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPH 168
           G++ R+      G+ NG  G     + EV TA+R +   A   ++ +        + +  
Sbjct: 189 GRKRRYSVLSVTGNGNGLAGFATAKAPEVRTALRKSKNRAGQKLINI-------SLCENR 241

Query: 169 TVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 220
           T+        G   +     P G G+V     + + ++ G++D Y    GST
Sbjct: 242 TIFHDFRTDFGKTKIFCFQKPDGYGLVCHRAIQTICKVIGIKDLYAKIEGST 293


>AE014296-3797|EAA46075.1|  407|Drosophila melanogaster CG40049-PA,
           isoform A protein.
          Length = 407

 Score = 32.3 bits (70), Expect = 0.69
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 7/112 (6%)

Query: 109 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPH 168
           G++ R+      G+ NG  G     + EV TA+R +   A   ++ +        + +  
Sbjct: 189 GRKRRYSVLSVTGNGNGLAGFATAKAPEVRTALRKSKNRAGQKLINI-------SLCENR 241

Query: 169 TVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 220
           T+        G   +     P G G+V     + + ++ G++D Y    GST
Sbjct: 242 TIFHDFRTDFGKTKIFCFQKPDGYGLVCHRAIQTICKVIGIKDLYAKIEGST 293


>AE014296-3796|EAA46076.2|  916|Drosophila melanogaster CG40049-PB,
           isoform B protein.
          Length = 916

 Score = 32.3 bits (70), Expect = 0.69
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 7/112 (6%)

Query: 109 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPH 168
           G++ R+      G+ NG  G     + EV TA+R +   A   ++ +        + +  
Sbjct: 189 GRKRRYSVLSVTGNGNGLAGFATAKAPEVRTALRKSKNRAGQKLINI-------SLCENR 241

Query: 169 TVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 220
           T+        G   +     P G G+V     + + ++ G++D Y    GST
Sbjct: 242 TIFHDFRTDFGKTKIFCFQKPDGYGLVCHRAIQTICKVIGIKDLYAKIEGST 293



 Score = 32.3 bits (70), Expect = 0.69
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 7/112 (6%)

Query: 109 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPH 168
           G++ R+      G+ NG  G     + EV TA+R +   A   ++ +        + +  
Sbjct: 466 GRKRRYSVLSVTGNGNGLAGFATAKAPEVRTALRKSKNRAGQKLINI-------SLCENR 518

Query: 169 TVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 220
           T+        G   +     P G G+V     + + ++ G++D Y    GST
Sbjct: 519 TIFHDFRTDFGKTKIFCFQKPDGYGLVCHRAIQTICKVIGIKDLYAKIEGST 570



 Score = 32.3 bits (70), Expect = 0.69
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 7/112 (6%)

Query: 109 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPH 168
           G++ R+      G+ NG  G     + EV TA+R +   A   ++ +        + +  
Sbjct: 743 GRKRRYSVLSVTGNGNGLAGFATAKAPEVRTALRKSKNRAGQKLINI-------SLCENR 795

Query: 169 TVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 220
           T+        G   +     P G G+V     + + ++ G++D Y    GST
Sbjct: 796 TIFHDFRTDFGKTKIFCFQKPDGYGLVCHRAIQTICKVIGIKDLYAKIEGST 847


>AE014296-2238|AAF49848.1|  954|Drosophila melanogaster CG11274-PA
           protein.
          Length = 954

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 167 PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 207
           PH+V  K  G  G + + L+P   G G+++  + K+L + A
Sbjct: 907 PHSVAAKRNGNAGKLAL-LLPGASGAGVINEDLEKQLRERA 946


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.320    0.139    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,058,737
Number of Sequences: 52641
Number of extensions: 384775
Number of successful extensions: 752
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 739
Number of HSP's gapped (non-prelim): 12
length of query: 261
length of database: 24,830,863
effective HSP length: 84
effective length of query: 177
effective length of database: 20,409,019
effective search space: 3612396363
effective search space used: 3612396363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)