Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000867-TA|BGIBMGA000867-PA|IPR005711|Ribosomal protein
S5, eukaryotic and archaeal form, IPR005324|Ribosomal protein S5,
C-terminal, IPR011070|Globular protein, non-globular alpha/beta
subunit, IPR000851|Ribosomal protein S5, IPR013810|Ribosomal protein
S5, N-terminal
         (261 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   331   3e-91
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    30   1.9  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  331 bits (813), Expect = 3e-91
 Identities = 159/212 (75%), Positives = 173/212 (81%), Gaps = 1/212 (0%)

Query: 45  EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQK 104
           E + EW PVTKLGRLV+E KI  LE IYL SLPIKEFEIID  L  +L DEVLKI PVQK
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQK 110

Query: 105 QTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKI 164
           QT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWGNKI
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKI 170

Query: 165 GKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 224
           G PHTVPCKVTGKC SV VRLIPAPRGTGIVSAPVPKKLL MAG++DCYT+A+GST TLG
Sbjct: 171 GLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLG 230

Query: 225 NFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPY 256
           NF              LTPDLW++  L KSPY
Sbjct: 231 NFAKATYAALQRTYSYLTPDLWKEEALEKSPY 262


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 177 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 220
           +C +  V     PRG G+   P   K+ +  G++D Y    GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 177 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 220
           +C +  V     PRG G+   P   K+ +  G++D Y    GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.139    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,033,105
Number of Sequences: 27539
Number of extensions: 189672
Number of successful extensions: 349
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 3
length of query: 261
length of database: 12,573,161
effective HSP length: 80
effective length of query: 181
effective length of database: 10,370,041
effective search space: 1876977421
effective search space used: 1876977421
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)