Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000867-TA|BGIBMGA000867-PA|IPR005711|Ribosomal protein
S5, eukaryotic and archaeal form, IPR005324|Ribosomal protein S5,
C-terminal, IPR011070|Globular protein, non-globular alpha/beta
subunit, IPR000851|Ribosomal protein S5, IPR013810|Ribosomal protein
S5, N-terminal
(261 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 364 e-101
SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.077
SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11) 32 0.41
SB_32128| Best HMM Match : Collagen (HMM E-Value=0.31) 30 2.2
SB_42712| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 29 3.8
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_52533| Best HMM Match : rve (HMM E-Value=2) 29 3.8
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7) 29 3.8
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33) 29 3.8
SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 29 5.1
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 5.1
SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 6.7
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 364 bits (896), Expect = e-101
Identities = 169/210 (80%), Positives = 181/210 (86%)
Query: 50 WVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAG 109
WVPVTKLGRLV++ KI LE IYLFSLPIKEFEIIDFFLG +L DEVLKIMPVQKQTRAG
Sbjct: 8 WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAG 67
Query: 110 QRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 169
QRTRFKAFVAIGD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 68 QRTRFKAFVAIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHT 127
Query: 170 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXX 229
VPCKVTGKCGS VRLIPAPRGTGIVSAPVPKKLLQMAG++DCYTS RG T TLGNF
Sbjct: 128 VPCKVTGKCGSTRVRLIPAPRGTGIVSAPVPKKLLQMAGIEDCYTSTRGQTATLGNFAKA 187
Query: 230 XXXXXXXXXXXLTPDLWRDIPLTKSPYSEF 259
LTPD+W++ TK+PY EF
Sbjct: 188 TFAAISETYAYLTPDMWKETVFTKTPYQEF 217
>SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 34.7 bits (76), Expect = 0.077
Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
Query: 151 SVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQ 210
S++ R +G K +P + C V G GS++ RL A G +S+ + + + +
Sbjct: 472 SIISRRSSSFGRKGSRPSCL-CSVAGAQGSISSRLCSAISRQGSISSRLCSAISRQGSIS 530
Query: 211 DCYTSARGSTGTLGNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSEFKV 261
SA G++ + + D+ + P SEFKV
Sbjct: 531 SRLCSAISRQGSISSRLSSAISRRGSMSSRSSSDVGIQGSILSRPNSEFKV 581
>SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11)
Length = 733
Score = 32.3 bits (70), Expect = 0.41
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 120 IGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLP-VRRGYWGNKIGKPHTVPCKVTGKC 178
IGD+ G + V+ +K + G++ L+ P +RRG G++ KPH+ P ++ +
Sbjct: 137 IGDSGGIDTMDVR-NKATGSVAWGSVTKRPLTSTPDIRRGQTGSEFRKPHSEPRFMSARF 195
Query: 179 GS 180
GS
Sbjct: 196 GS 197
>SB_32128| Best HMM Match : Collagen (HMM E-Value=0.31)
Length = 330
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 158 GYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 199
GY G ++G P +TG G RL P ++ PV
Sbjct: 112 GYTGERLGPTAHAPASITGPVGYADERLGPTAHAPASITGPV 153
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 158 GYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 199
GY G ++G P +TG G RL P ++ PV
Sbjct: 196 GYTGERLGPTAHAPASITGPVGYADERLGPTAHAPASITGPV 237
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 158 GYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 199
GY G ++G P +TG G RL P ++ PV
Sbjct: 49 GYAGKRLGPTAHAPASITGPVGYADERLGPTAHAPASITGPV 90
>SB_42712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 158 GYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 199
GY G ++G P +TG G RL P ++ PV
Sbjct: 162 GYAGERLGPTAHAPASITGPVGYADERLGPTAHAPASITGPV 203
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 141 IRGAIILAKLSVLPVRR--GYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAP 198
+ A I + ++P+ GY ++G P +TG G RL P ++ P
Sbjct: 80 VSSAAIRKQYELIPITGPVGYADERLGPTAHAPASITGPVGYADKRLGPTAHAPASITGP 139
Query: 199 VPKKLLQMAGVQDCYTSARGSTGTLG 224
V ++ S G G G
Sbjct: 140 VGYADERLGSTTHAPASITGPVGYAG 165
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 93 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 130
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 93 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 130
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 93 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 130
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045
>SB_52533| Best HMM Match : rve (HMM E-Value=2)
Length = 212
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 93 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 130
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 95 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132
>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
Length = 212
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 93 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 130
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 9 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46
>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
Length = 735
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 93 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 130
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569
>SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1565
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 124 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 183
+ H G +K A A AK L +G++ G+ + +PC T + +
Sbjct: 23 SAHYGNILKTGILELRACAEARACAKFKFLVKHKGFYSAAFGRNYKIPCGTTDDRADIRL 82
Query: 184 --RLIPAPRGTGIVSAPVPKKLLQ 205
++ P R +P PKKLL+
Sbjct: 83 YYKVNPVKR-QWTEKSPTPKKLLK 105
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 153 LPVRRGYWGNKIG--KPHTVPCKVTGKCGSVTVRLIPAPRGT 192
LP GYW N G P PC V C + + P P GT
Sbjct: 3355 LPCPAGYWCNIKGLADPSISPCPVGHYCLNAIDKPTPCPNGT 3396
>SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 932
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 177 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 224
+CG+ + + R ++ P+P L ++ +Q C + STGT G
Sbjct: 591 RCGTHALTKTVSERVPDVLKHPLPPPLQELQELQVCDPPSTSSTGTTG 638
>SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 822
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 151 SVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 197
+V RG+W + + H + C V +CG + L AP +VS+
Sbjct: 303 TVFTTYRGFWNYALVRKHWLKCVVNLQCG-IAKHLSQAPSNKLLVSS 348
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 109 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 138
G++ + K F+A+G NGH+ C ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.139 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,821,783
Number of Sequences: 59808
Number of extensions: 264600
Number of successful extensions: 417
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 36
length of query: 261
length of database: 16,821,457
effective HSP length: 81
effective length of query: 180
effective length of database: 11,977,009
effective search space: 2155861620
effective search space used: 2155861620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
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