GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000866-TA|BGIBMGA000866-PA|IPR000246|Peptidase T2,
asparaginase 2
         (248 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    48   1e-06
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    29   0.84 
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    26   4.5  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    26   5.9  

>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 21/42 (50%), Positives = 29/42 (69%)

Query: 108 NHDTIGMVAIDQHGDIAAGTSTNGAKYKIPGRIGDSPIPGSG 149
           + DTIG++ +D++G IA  +S+ G   K  GRIG SPIPG G
Sbjct: 173 SQDTIGVICVDKNGRIAVVSSSGGLLLKPAGRIGSSPIPGHG 214


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 14  HAISVARHVLDHTKHSFLVGELATQFAVEMGFQEESLTTSVSKKLWMKWHNEHHCQPNFW 73
           H +     +L  +KH + +   ++ +      + +     +SK +W+ W    +C+ NF+
Sbjct: 608 HLLRPTIKILQISKHEYFL-HFSSSYIFNDARERDVYGVKLSKNMWISWAYVDNCEANFF 666


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 179 EEMRRGSSPTDAAKTAVARIASHYPDFMGAVVALKNDGEYGAACHGINMFPYVVYDKKHS 238
           E   + S  T   K+AV + ++    F+  +  ++ +  +     G+N   Y++ DK  S
Sbjct: 106 ESANQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPS 165

Query: 239 SY 240
            Y
Sbjct: 166 EY 167


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 105 DRFNHDTIGMVAIDQHGDIAAGTSTNGAKYKIPGRIGDSPI 145
           D   +  +   ++  H DI     +NGAK  + G  G  PI
Sbjct: 892 DALGYTPLHYASLYDHKDICVNLLSNGAKPDVIGASGKKPI 932


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,129,782
Number of Sequences: 5004
Number of extensions: 44291
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 5
length of query: 248
length of database: 2,362,478
effective HSP length: 71
effective length of query: 177
effective length of database: 2,007,194
effective search space: 355273338
effective search space used: 355273338
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)