GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000866-TA|BGIBMGA000866-PA|IPR000246|Peptidase T2,
asparaginase 2
         (248 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50198-2|AAA91260.2|  363|Caenorhabditis elegans Hypothetical pr...   224   5e-59
Z92803-13|CAB07249.2|  331|Caenorhabditis elegans Hypothetical p...    36   0.036
AL021482-4|CAA16341.2|  331|Caenorhabditis elegans Hypothetical ...    36   0.036
AF003136-4|AAK93853.2|  368|Caenorhabditis elegans Acyltransfera...    31   1.0  
AB096001-1|BAE53417.1|  676|Caenorhabditis elegans bHLH-PAS fact...    30   1.8  
AC024791-24|AAF60656.1|  627|Caenorhabditis elegans Hypothetical...    29   3.1  
Z19157-5|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U80031-3|AAB37613.1|  524|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U00036-3|AAT92065.1|  529|Caenorhabditis elegans Dumpy : shorter...    28   7.2  
U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter...    28   7.2  
D30651-1|BAA21637.1|  646|Caenorhabditis elegans flavoprotein su...    27   9.5  
CU457741-13|CAM36354.1|  608|Caenorhabditis elegans Hypothetical...    27   9.5  
CU457741-11|CAM36352.1|  609|Caenorhabditis elegans Hypothetical...    27   9.5  
AF068201-1|AAC70927.1|  609|Caenorhabditis elegans aminopeptidas...    27   9.5  
AF068200-1|AAC72891.1|  609|Caenorhabditis elegans aminopeptidas...    27   9.5  
AF043695-10|AAO61434.1|  608|Caenorhabditis elegans Hypothetical...    27   9.5  
AF043695-9|AAB97552.2|  609|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U50198-2|AAA91260.2|  363|Caenorhabditis elegans Hypothetical
           protein R04B3.2 protein.
          Length = 363

 Score =  224 bits (547), Expect = 5e-59
 Identities = 116/240 (48%), Positives = 148/240 (61%), Gaps = 10/240 (4%)

Query: 1   MNIGAVGGLRRIKHAISVARHVLDHTKHSFLVGELATQFAVEMGFQEESLTTSVSKKLWM 60
           M +GAV  L RI+ A  VA  V++ TKH+ LVGE ATQFA  +GF+EE L+T  +K    
Sbjct: 95  MRVGAVANLHRIRDAARVAWGVMNFTKHTLLVGESATQFAKTLGFKEEDLSTEETKSWIS 154

Query: 61  KWHNEHHCQPNFWLNVSPDPTRNCGPYQKHEYSHHLLKKSHLN--------VDRFNHDTI 112
           KW  E  CQPNFW NVSPDP+ +CGPY+ +  +  +   S +N        V++ NHDTI
Sbjct: 155 KWKTEK-CQPNFWKNVSPDPSSSCGPYKTNPLTKSMRYYSLVNQSDEAGYLVEKTNHDTI 213

Query: 113 GMVAIDQHGDIAAGTSTNGAKYKIPGRIGDSPIPGSGAYXXXXXXXXXXXXXXXVMLRFL 172
           GMV  D     +AGTS+NGA++KIPGR+GDSPIPG+GAY               VM+RFL
Sbjct: 214 GMVVRDTENIFSAGTSSNGARFKIPGRVGDSPIPGAGAY-ANKFGGAAATGDGDVMMRFL 272

Query: 173 PSFLTVEEMRRGSSPTDAAKTAVARIASHYPDFMGAVVALKNDGEYGAACHGINMFPYVV 232
           PSF  V +M  G+ P+ AA  A+ RI   +P F GAVVA+   G  GA+C  IN F Y V
Sbjct: 273 PSFFAVTQMELGTKPSKAAYKAITRILKVFPKFSGAVVAMNVKGRIGASCANINKFGYNV 332


>Z92803-13|CAB07249.2|  331|Caenorhabditis elegans Hypothetical
           protein K01G5.9 protein.
          Length = 331

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 109 HDTIGMVAIDQHG-DIAAGTSTNGAKYKIPGRIGDSPIPGSGAY 151
           HDT+G ++I+ +  +  +GTS+ G   K  GR+G S + GSG +
Sbjct: 156 HDTVGAISINTNTMNSESGTSSGGIVLKHSGRLGHSCVYGSGTW 199


>AL021482-4|CAA16341.2|  331|Caenorhabditis elegans Hypothetical
           protein K01G5.9 protein.
          Length = 331

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 109 HDTIGMVAIDQHG-DIAAGTSTNGAKYKIPGRIGDSPIPGSGAY 151
           HDT+G ++I+ +  +  +GTS+ G   K  GR+G S + GSG +
Sbjct: 156 HDTVGAISINTNTMNSESGTSSGGIVLKHSGRLGHSCVYGSGTW 199


>AF003136-4|AAK93853.2|  368|Caenorhabditis elegans
           Acyltransferase-like protein 11 protein.
          Length = 368

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)

Query: 60  MKWHNEHHCQPNFWLNVSPDPTRNCGPYQKH--EYSHHLLKKS 100
           +KW NE    P +WL + P+ TRN    +KH  E S+  L+KS
Sbjct: 165 LKWLNES--DPPYWLLIFPEGTRNSAK-KKHLLESSNRFLEKS 204


>AB096001-1|BAE53417.1|  676|Caenorhabditis elegans bHLH-PAS factor
           protein.
          Length = 676

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 65  EHHCQPNFWLNVSPDPTRNCGPYQKHEYSHHLLKKSHLN 103
           +H  QPN  L ++P P  +C P   +  S+ L    HLN
Sbjct: 614 QHQSQPNHPLQMTPIPPMSCPP-SNYGQSNFLFHHQHLN 651


>AC024791-24|AAF60656.1|  627|Caenorhabditis elegans Hypothetical
           protein Y47G6A.4 protein.
          Length = 627

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 74  LNVSPD-PTRNCGPYQKHEYSHHLLK---KSHLNVDR--FNHDTIGMVAIDQHGDIAAGT 127
           L +SP+ P   C PY+  E+  HLLK   KS +  DR  FN    G+  +  +  I A T
Sbjct: 274 LGISPNGPADGCEPYEVFEWLQHLLKQHPKSPILCDRAQFNFVYYGIKTLATYTGINAIT 333


>Z19157-5|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
           protein ZC84.6 protein.
          Length = 1474

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 64  NEHHCQPN--FWLNVSPDPTRNCGPYQKHEYSHH 95
           N H C P   F  ++SP P + CGP    +Y ++
Sbjct: 534 NMHGCCPTKAFTCSLSPSPGKTCGPGVSFKYHYN 567


>U80031-3|AAB37613.1|  524|Caenorhabditis elegans Hypothetical
           protein B0554.4 protein.
          Length = 524

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 3   IGAVGGLRRIKHAISVARHVLDHTKHSFLVGELAT-QFAVEMGFQE 47
           +  VGG RR+  +++ A+        ++ VG+  T QF +++G+ +
Sbjct: 397 VSTVGGTRRVMDSVTCAQSTCSPKSLTYGVGDNQTPQFQIDVGYSD 442


>U00036-3|AAT92065.1|  529|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 31, isoform b protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 32  VGELATQFAVEMGFQEESLTTSVSKKLWMKWHNEHHCQPNFWLNVSPDPTRNCG-PYQKH 90
           +G +A + A  +GF  E       + + ++W N        +L   PD   N G PY   
Sbjct: 217 LGVIAHEVAHALGFWHEQSRPDRDQYVTVRWENIDKDSKGQFLKEDPDDVDNAGVPYDYG 276

Query: 91  EYSHHLLK 98
              H+  K
Sbjct: 277 SIMHYRSK 284


>U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 31, isoform a protein.
          Length = 592

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 32  VGELATQFAVEMGFQEESLTTSVSKKLWMKWHNEHHCQPNFWLNVSPDPTRNCG-PYQKH 90
           +G +A + A  +GF  E       + + ++W N        +L   PD   N G PY   
Sbjct: 217 LGVIAHEVAHALGFWHEQSRPDRDQYVTVRWENIDKDSKGQFLKEDPDDVDNAGVPYDYG 276

Query: 91  EYSHHLLK 98
              H+  K
Sbjct: 277 SIMHYRSK 284


>D30651-1|BAA21637.1|  646|Caenorhabditis elegans flavoprotein
          subunit of complex II protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 22 VLDHTKHSFLVGELATQFAVEMGFQEESLTTSVSKKLW 59
          V+DH   + +VG         MG  EE L T+V  KL+
Sbjct: 38 VVDHAYDAVVVGAGGAGLRAAMGLAEEGLKTAVITKLF 75


>CU457741-13|CAM36354.1|  608|Caenorhabditis elegans Hypothetical
           protein C42C1.11c protein.
          Length = 608

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 23  LDHTKHSFLVGELATQFAVEMGFQEESLTTSVSKKLWMKWHNEHHCQPNFWLNVSPDPTR 82
           L+   H  + GEL  QF  E G+ EE+L  +V+  ++   H       N   N  PD   
Sbjct: 325 LERKIHGKMYGELERQFESESGY-EEALVRTVN-DVFGPDHEYTKLVQNLG-NADPDDAF 381

Query: 83  NCGPYQK 89
           +  PY+K
Sbjct: 382 SSVPYEK 388


>CU457741-11|CAM36352.1|  609|Caenorhabditis elegans Hypothetical
           protein C42C1.11a protein.
          Length = 609

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 23  LDHTKHSFLVGELATQFAVEMGFQEESLTTSVSKKLWMKWHNEHHCQPNFWLNVSPDPTR 82
           L+   H  + GEL  QF  E G+ EE+L  +V+  ++   H       N   N  PD   
Sbjct: 326 LERKIHGKMYGELERQFESESGY-EEALVRTVN-DVFGPDHEYTKLVQNLG-NADPDDAF 382

Query: 83  NCGPYQK 89
           +  PY+K
Sbjct: 383 SSVPYEK 389


>AF068201-1|AAC70927.1|  609|Caenorhabditis elegans aminopeptidase-1
           protein.
          Length = 609

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 23  LDHTKHSFLVGELATQFAVEMGFQEESLTTSVSKKLWMKWHNEHHCQPNFWLNVSPDPTR 82
           L+   H  + GEL  QF  E G+ EE+L  +V+  ++   H       N   N  PD   
Sbjct: 326 LERKIHGKMYGELERQFESESGY-EEALVRTVN-DVFGPDHEYTKLVQNLG-NADPDDAF 382

Query: 83  NCGPYQK 89
           +  PY+K
Sbjct: 383 SSVPYEK 389


>AF068200-1|AAC72891.1|  609|Caenorhabditis elegans aminopeptidase-1
           protein.
          Length = 609

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 23  LDHTKHSFLVGELATQFAVEMGFQEESLTTSVSKKLWMKWHNEHHCQPNFWLNVSPDPTR 82
           L+   H  + GEL  QF  E G+ EE+L  +V+  ++   H       N   N  PD   
Sbjct: 326 LERKIHGKMYGELERQFESESGY-EEALVRTVN-DVFGPDHEYTKLVQNLG-NADPDDAF 382

Query: 83  NCGPYQK 89
           +  PY+K
Sbjct: 383 SSVPYEK 389


>AF043695-10|AAO61434.1|  608|Caenorhabditis elegans Hypothetical
           protein C42C1.11c protein.
          Length = 608

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 23  LDHTKHSFLVGELATQFAVEMGFQEESLTTSVSKKLWMKWHNEHHCQPNFWLNVSPDPTR 82
           L+   H  + GEL  QF  E G+ EE+L  +V+  ++   H       N   N  PD   
Sbjct: 325 LERKIHGKMYGELERQFESESGY-EEALVRTVN-DVFGPDHEYTKLVQNLG-NADPDDAF 381

Query: 83  NCGPYQK 89
           +  PY+K
Sbjct: 382 SSVPYEK 388


>AF043695-9|AAB97552.2|  609|Caenorhabditis elegans Hypothetical
           protein C42C1.11a protein.
          Length = 609

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 23  LDHTKHSFLVGELATQFAVEMGFQEESLTTSVSKKLWMKWHNEHHCQPNFWLNVSPDPTR 82
           L+   H  + GEL  QF  E G+ EE+L  +V+  ++   H       N   N  PD   
Sbjct: 326 LERKIHGKMYGELERQFESESGY-EEALVRTVN-DVFGPDHEYTKLVQNLG-NADPDDAF 382

Query: 83  NCGPYQK 89
           +  PY+K
Sbjct: 383 SSVPYEK 389


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.134    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,135,105
Number of Sequences: 27539
Number of extensions: 246442
Number of successful extensions: 510
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 19
length of query: 248
length of database: 12,573,161
effective HSP length: 80
effective length of query: 168
effective length of database: 10,370,041
effective search space: 1742166888
effective search space used: 1742166888
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)