Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000865-TA|BGIBMGA000865-PA|IPR007005|XAP5 protein
         (339 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   0.60 
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   5.6  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   7.4  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 10/28 (35%), Positives = 21/28 (75%)

Query: 172 EADLKLREELRLEWVMTQASLKDEPITV 199
           E+ L+LREE++++  MT  S +++P ++
Sbjct: 172 ESALRLREEIKVDPFMTGFSHRNQPTSI 199


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 21  REKAQQEIELRKKKIEEDLKIDNI 44
           + +  +E +  KK+IEE  +IDN+
Sbjct: 206 QNRRAKERKQNKKRIEEKSQIDNL 229


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/22 (27%), Positives = 12/22 (54%)

Query: 311 ERNKHIFPASRWEPYDPTKTYS 332
           ++N H++   +W  +D  K  S
Sbjct: 319 QKNTHMYKGDQWVAFDSPKAIS 340


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,598
Number of Sequences: 317
Number of extensions: 2177
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 3
length of query: 339
length of database: 114,650
effective HSP length: 57
effective length of query: 282
effective length of database: 96,581
effective search space: 27235842
effective search space used: 27235842
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)