Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000865-TA|BGIBMGA000865-PA|IPR007005|XAP5 protein
(339 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc... 113 3e-26
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 28 2.2
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 27 5.1
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 27 5.1
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 27 5.1
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 26 8.8
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 26 8.8
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 26 8.8
>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 288
Score = 113 bits (272), Expect = 3e-26
Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 157 NPDVDTSFLPDREREEADLKLREELRLEWVMTQASLKDEPITVTFSYWDGSGHRRNVTLK 216
+P DTSFLPD ERE + R E R +W+ Q ++++ I + F Y+DG+ +V +
Sbjct: 99 DPSADTSFLPDAEREIRENAKRAEYRKQWLKEQEQIREKEILIPFIYYDGTSTTYHVRTR 158
Query: 217 KGNSIYQFLQRCLDALRPEFSELKTI-SADQLMYVKEDLILPHHYTFYDFIVTKARGKSG 275
+S+ FL ++ + LK I D+ + V+ DLI+PHH+ Y F + K +G+ G
Sbjct: 159 LKDSVGHFLA----DMKQQIPFLKRILDMDKFLLVQSDLIIPHHHELYYFYINKVQGRDG 214
Query: 276 PLFQFDASDDVRLVNDATQEKQDSHAGKVLLRSWYERNKHIFPASRWEPYDPTKTYS 332
LF FD AT + ++ +S+Y +N+H+FP WE +D K YS
Sbjct: 215 LLFDFDKLSCSSPEMVATTQLPSQCIPHLVQKSYYLQNRHVFPCVHWEVFDSRKDYS 271
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 20 KREKAQQEIELRKKKIEEDL-KIDNIENKFATHYDAVEQQLKSSTI 64
+R++ +Q+IE+RK+K EE L K N+ D VE++ S +
Sbjct: 25 RRQREEQQIEIRKQKREESLNKRRNLNAVLQNDID-VEEEADQSQV 69
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 5.1
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 22 EKAQQEIELRKKKIEEDLKIDNIENKFATHYDAVEQQLKSSTIGLVTLDEMKAKQE 77
E +Q I+ +K E L+ NI +HY+A + K+S L +EM+ E
Sbjct: 147 EMSQNWIDWEEKIAERLLEGSNISGVETSHYNAQSVKNKTSNEDLFDTNEMRKISE 202
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 26.6 bits (56), Expect = 5.1
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 1 MAHYKGAASEAGR-AMHLMKKREKAQQEIELRKKKIEEDLK-IDNIENKFATHYDAVEQQ 58
MA K E R + L + + +Q+ E R + IE+ ID N +D++EQ+
Sbjct: 151 MAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRFNSIDRRFDSMEQR 210
Query: 59 LKSSTIGLVTLD 70
L S + T+D
Sbjct: 211 LDSMDQKMETID 222
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 26.6 bits (56), Expect = 5.1
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 1 MAHYKGAASEAGR-AMHLMKKREKAQQEIELRKKKIEEDLK-IDNIENKFATHYDAVEQQ 58
MA K E R + L + + +Q+ E R + IE+ ID N +D++EQ+
Sbjct: 151 MAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRFNSIDRRFDSMEQR 210
Query: 59 LKSSTIGLVTLD 70
L S + T+D
Sbjct: 211 LDSMDQKMETID 222
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 8.8
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 5 KGAASEAGRAMHLMKKREKAQQEIELRKKKIEEDLKIDNIENKFATHYDAVEQQLKSSTI 64
K + E+ + KK+EK +++ +L+KK + LK+D+ + ++ KSS
Sbjct: 132 KTSGKESSKREKSKKKKEKKEKKDKLKKK--SKRLKLDDSHTQKRKRKVRDKESKKSSKS 189
Query: 65 GL 66
GL
Sbjct: 190 GL 191
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 8.8
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 4/37 (10%)
Query: 3 HYKGAASEAGRAMHLMKKREKAQQEIELRKKKIEEDL 39
+YKG + +A L ++RE Q+IE+RK+K EE+L
Sbjct: 15 NYKGKGTF--QADELRRRRET--QQIEIRKQKREENL 47
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 25.8 bits (54), Expect = 8.8
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 7 AASEAGRAMHLMKKREKAQQEIELRKKKIEEDL 39
A+ E RA+ L RE+A+ +++LR K+ ++ L
Sbjct: 136 ASLEEERAVQLKHDRERAEVDLQLRLKREKDAL 168
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.132 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,251,193
Number of Sequences: 5004
Number of extensions: 47883
Number of successful extensions: 186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 13
length of query: 339
length of database: 2,362,478
effective HSP length: 73
effective length of query: 266
effective length of database: 1,997,186
effective search space: 531251476
effective search space used: 531251476
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)
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