Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000865-TA|BGIBMGA000865-PA|IPR007005|XAP5 protein
(339 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g21150.1 68415.m02509 XAP5 family protein contains Pfam profi... 240 8e-64
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m... 31 1.5
At4g32190.1 68417.m04581 centromeric protein-related low similar... 30 1.9
At5g60830.1 68418.m07631 bZIP transcription factor family protei... 30 2.5
At3g55830.1 68416.m06203 glycosyltransferase family protein 47 s... 29 3.4
At2g06210.2 68415.m00683 phosphoprotein-related low similarity t... 29 4.4
At2g06210.1 68415.m00684 phosphoprotein-related low similarity t... 29 4.4
At1g64320.1 68414.m07289 myosin heavy chain-related similar to m... 29 4.4
At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to... 29 4.4
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 29 5.9
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 28 7.8
At1g21810.1 68414.m02729 expressed protein 28 7.8
>At2g21150.1 68415.m02509 XAP5 family protein contains Pfam profile:
PF04921 XAP5 protein
Length = 337
Score = 240 bits (588), Expect = 8e-64
Identities = 101/182 (55%), Positives = 137/182 (75%)
Query: 157 NPDVDTSFLPDREREEADLKLREELRLEWVMTQASLKDEPITVTFSYWDGSGHRRNVTLK 216
+P V+T+FLPD ERE + RE L+ +W+ Q +K+EP+ +T+SYWDG+GHRR + ++
Sbjct: 155 DPSVETNFLPDSEREAEEQAERERLKKQWLREQEQIKNEPLEITYSYWDGTGHRRVIQVR 214
Query: 217 KGNSIYQFLQRCLDALRPEFSELKTISADQLMYVKEDLILPHHYTFYDFIVTKARGKSGP 276
KG+ I FL+ L P+F E++T S + L+YVKEDLI+PH ++FY+ I+ KARGKSGP
Sbjct: 215 KGDPIGNFLRAVQQQLAPDFREIRTASVENLLYVKEDLIIPHQHSFYELIINKARGKSGP 274
Query: 277 LFQFDASDDVRLVNDATQEKQDSHAGKVLLRSWYERNKHIFPASRWEPYDPTKTYSKYTI 336
LF FD +DVR + DAT EK +SHAGKV+ R WYE+NKHIFPASRWE YDPTK + +YT+
Sbjct: 275 LFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTV 334
Query: 337 KG 338
G
Sbjct: 335 HG 336
Score = 35.1 bits (77), Expect = 0.068
Identities = 21/76 (27%), Positives = 36/76 (47%)
Query: 4 YKGAASEAGRAMHLMKKREKAQQEIELRKKKIEEDLKIDNIENKFATHYDAVEQQLKSST 63
Y G A +A R L K+RE +++I+ K K + + + ++ K T
Sbjct: 8 YVGTAQDAVRIRRLQKQREAERKKIQELKSKSASGNDQSGLLQFGTSSCEILDTAFKKET 67
Query: 64 IGLVTLDEMKAKQEHI 79
+GLVT +E K+ +I
Sbjct: 68 VGLVTREEYVEKRVNI 83
>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
myosin heavy chain (GI:1850913) [Entamoeba histolytica];
similar to Intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae]
Length = 555
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 19 KKREKAQQEIELRKKKIEE-DLKIDNIENKFAT---HYDAVEQQLKSSTIGLVTLDEM 72
K+ + + EIEL KK++E+ +L+I +++ K AT H +AVE + + L DE+
Sbjct: 111 KRNGRGENEIELLKKQMEDANLEIADLKMKLATTDEHKEAVESEHQEILKKLKESDEI 168
>At4g32190.1 68417.m04581 centromeric protein-related low similarity
to SP|Q02224 Centromeric protein E (CENP-E protein)
{Homo sapiens}
Length = 783
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 9 SEAGRAMHLMKKREKAQQEIELRKKKIEEDLKIDNIE 45
++ RA ++KREK E L+ + ++E+LK N+E
Sbjct: 140 NKLNRAKEELEKREKTISEASLKHESLQEELKRANVE 176
>At5g60830.1 68418.m07631 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor
Length = 206
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 3 HYKGAASEAGRAMHLMKKREKAQQEIELRKKKIEE 37
H +G A E RA ++ RE A++ +KK+IEE
Sbjct: 62 HNEGLAPEERRARRMVSNRESARRSRMRKKKQIEE 96
>At3g55830.1 68416.m06203 glycosyltransferase family protein 47
similar to exostose-related protein 2, Homo sapiens,
PIR:JC5935 [SP|Q93063], EXTL2, Mus musculus
[GI:10443633]
Length = 334
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 230 DALRPEFSELKTISADQLMYVKEDLILPHHYTFYDFIV 267
D+L F E+K + D + + +D+I P H + F V
Sbjct: 145 DSLNNRFKEIKDLKTDAVFSIDDDIIFPCHTVDFAFNV 182
>At2g06210.2 68415.m00683 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 852
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 8 ASEAGRAMHLMKKREKAQQEIELRKKKIEEDL-KIDNIENKFATHYDAVEQQLKSSTIG 65
A +A A +K E+ Q++ +L K+K EE+L ++ E KF +++Q KSST G
Sbjct: 640 ARQAALAEEARRKAEE-QRKYQLEKRKQEEELRRLKQEEEKF----QRIKEQWKSSTPG 693
>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 1064
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 8 ASEAGRAMHLMKKREKAQQEIELRKKKIEEDL-KIDNIENKFATHYDAVEQQLKSSTIG 65
A +A A +K E+ Q++ +L K+K EE+L ++ E KF +++Q KSST G
Sbjct: 852 ARQAALAEEARRKAEE-QRKYQLEKRKQEEELRRLKQEEEKF----QRIKEQWKSSTPG 905
>At1g64320.1 68414.m07289 myosin heavy chain-related similar to
myosin heavy chain (GI:4249703) [Rana catesbeiana];
similar to smooth muscle myosin heavy chain SM2
(GI:2352945) [Homo sapiens]
Length = 476
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 7 AASEAGRAMHLMKKREKAQQEIELRKKKIEEDLKIDNIENKFATHYDAVEQQLKSSTIGL 66
A E A + K + ++ E +L ++ E+ LK+ + +KF T +E ++K + L
Sbjct: 378 AKLECSEAQETLLKEKLSKLEKKLAEEGTEK-LKLAKVLSKFETRIKELEVKVKGREVEL 436
Query: 67 VTLDEMK 73
++L E K
Sbjct: 437 LSLGEEK 443
>At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to
myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis
thaliana]; similar to ESTs gb|R30087 and gb|AA394762
Length = 1538
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 9 SEAGRAMHLMKKREKAQQEIELRKKKIEEDLK 40
+E RA ++K E+AQ+ +E +KKK+EE K
Sbjct: 999 NEKQRADDAVRKFEEAQESLEDKKKKLEETEK 1030
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 159 DVDTSFLPDREREEADLKLREELRLEWVMTQASLKDEPITV 199
D +FL ++ER EA +K E + +W+ K+ +T+
Sbjct: 4632 DSKVAFLLEQERAEASMKEAETAKSQWLCQICQTKEVEVTI 4672
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 33 KKIEEDLKIDNIENKFATHYDAVEQQLKSSTI 64
KK E DL +DN+ + + ++EQ L SS +
Sbjct: 4383 KKAENDLNLDNLCKLLSESFGSIEQLLNSSGV 4414
>At1g21810.1 68414.m02729 expressed protein
Length = 628
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 9 SEAGRAMHLMKKREKAQQEIELRKKKIEEDLKIDNIENKFATHYDAVEQQLK 60
+EA ++ ++M +RE Q +L IE DL E H D +++ K
Sbjct: 115 AEAAKSENMMLRREFLTQREDLEIVMIERDLSTQAAETASKQHLDIIKKLAK 166
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.132 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,318,239
Number of Sequences: 28952
Number of extensions: 239592
Number of successful extensions: 906
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 894
Number of HSP's gapped (non-prelim): 16
length of query: 339
length of database: 12,070,560
effective HSP length: 82
effective length of query: 257
effective length of database: 9,696,496
effective search space: 2491999472
effective search space used: 2491999472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
- SilkBase 1999-2023 -