Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000862-TA|BGIBMGA000862-PA|IPR001752|Kinesin, motor
region
         (696 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              29   0.13 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    26   1.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   1.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   2.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   3.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   4.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   6.4  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   8.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 29.1 bits (62), Expect = 0.13
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 262 ILQNSLGGNAKTSIICAVTP--AALEETISTLQFGNRAKFIKN 302
           I+ NS+GG +  +++    P  A +E +  T+ FG  A F  N
Sbjct: 288 IVNNSVGGESVETVLTVTAPLGAEIEPSTQTIDFGRPATFTCN 330


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 614 DLQSQLVVKNQTIVELQADICAQNQTI 640
           +LQ  L VK++ IVEL+A +C ++  I
Sbjct: 6   ELQELLRVKDEKIVELEALLCRRDAEI 32


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 262 ILQNSLGGNAKTSIICAVTPAALEETIST 290
           ++Q+  G  A+   +C  TP A+E   +T
Sbjct: 180 VVQHQSGSEAEAEFVCIATPEAIELHFTT 208


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 514 TFNKQSKEKDLQMEYMKKKIQKLEDTIVNVTSEKEKLETRCKDVDIKLTD 563
           T  K SK+  L  +   KK++K +D I+NV  E  +  T   +V    T+
Sbjct: 681 TLTKNSKQ-GLFSKLFAKKVKKDKDIILNVPKESTQSLTTTGNVSYLTTN 729


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 493 ELLEKLEEKTYAITMLQDEMETFNKQSKEKDLQMEYMKKKIQKLED 538
           E+ +K EE      +  D  E  NK+     L+ E  K++ + L+D
Sbjct: 87  EVNDKKEENFIVDRLRNDLFECENKEKSNVCLKFEEQKRRKKSLDD 132


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 16   TREIEEKLPYQWRIKNNSLYQLD 38
            T ++ ++LPY W + N    ++D
Sbjct: 1098 TEKLTDRLPYPWTMDNERYVKVD 1120


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 13/47 (27%), Positives = 23/47 (48%)

Query: 503 YAITMLQDEMETFNKQSKEKDLQMEYMKKKIQKLEDTIVNVTSEKEK 549
           Y I+  +D    F      +DL  E  K+ ++ + D + N TS++ K
Sbjct: 82  YDISDFKDVDPIFGTIKDLEDLTAEAKKQNLKVILDLVPNHTSDQHK 128


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 523 DLQMEYMKKKIQKLEDTIVNVTSEKEKLETRCKDVDIKLTDWEVSYDT 570
           DL    + K+++   D  VN T+EK  L T    + ++L   EV+  T
Sbjct: 156 DLNTSQLLKQVKIPHDIAVNTTTEKGALVT----LSVQLLSCEVNGST 199


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.129    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,663
Number of Sequences: 429
Number of extensions: 8599
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 8
length of query: 696
length of database: 140,377
effective HSP length: 62
effective length of query: 634
effective length of database: 113,779
effective search space: 72135886
effective search space used: 72135886
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 47 (23.0 bits)