GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000862-TA|BGIBMGA000862-PA|IPR001752|Kinesin, motor
region
         (696 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    27   0.57 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    27   0.57 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    27   0.57 
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    25   1.7  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    25   1.7  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    25   1.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   3.1  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   5.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   7.1  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 26.6 bits (56), Expect = 0.57
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 31  NNSLYQLDQNG-KEFGSSFTFDKVYDESTKTSE 62
           NN+ +  + NG    GSS  FDK+ +E ++++E
Sbjct: 137 NNTNFNNNSNGASSVGSSSPFDKLIEEDSRSNE 169


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 0.57
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 31  NNSLYQLDQNG-KEFGSSFTFDKVYDESTKTSE 62
           NN+ +  + NG    GSS  FDK+ +E ++++E
Sbjct: 85  NNTNFNNNSNGASSVGSSSPFDKLIEEDSRSNE 117


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 26.6 bits (56), Expect = 0.57
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 31  NNSLYQLDQNG-KEFGSSFTFDKVYDESTKTSE 62
           NN+ +  + NG    GSS  FDK+ +E ++++E
Sbjct: 268 NNTNFNNNSNGASSVGSSSPFDKLIEEDSRSNE 300


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 6/46 (13%)

Query: 621 VKNQTIVELQADICAQNQTITFLE------KSSQELQDMINNYKEN 660
           V   T + L  +IC + QTI  +       K+  E+QD+I+  K+N
Sbjct: 270 VNASTNIFLCDEICNEGQTILGISYSLEKLKTGDEIQDLISTIKDN 315


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 6/46 (13%)

Query: 621 VKNQTIVELQADICAQNQTITFLE------KSSQELQDMINNYKEN 660
           V   T + L  +IC + QTI  +       K+  E+QD+I+  K+N
Sbjct: 270 VNASTNIFLCDEICNEGQTILGISYSLEKLKTGDEIQDLISTIKDN 315


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 8/59 (13%)

Query: 102 SSPGIITLAVLNLFEIIKNIPDRDFLVRVSYIEIYNETVKDLLNIEKDNIKIHDTLQGI 160
           S+  +I L +   FE+I NI  R         ++ + T+K L N+ K  +K+   + GI
Sbjct: 103 STLNLIFLLIQTRFEMINNIITRG--------DVTSTTIKKLFNLHKILVKVVREINGI 153


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 10/48 (20%), Positives = 21/48 (43%)

Query: 564  WEVSYDTFKKKAKQREEELLSIVEELKTKSHTGEISTNKEDESSTPNL 611
            W +  D FK +  +    LL+ +  +   + TG+  T    +   P++
Sbjct: 1738 WALDLDDFKNRCGEGRHPLLTTIRNVLADAGTGQQETIPPIDEEPPSV 1785


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 105 GIITLAVLNLFEIIKN 120
           G+ TL+VLNL  +IK+
Sbjct: 478 GLATLSVLNLLSVIKS 493


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 532  KIQKLEDTIVNVTSEKEKLETRCKDVDI--KLTDWEVSYDTFKKKAKQREEELLSIVEEL 589
            KI   +DT    T+ KE +   C  V +   +  W++    F    K R++   S+    
Sbjct: 1308 KIASFDDTF--TTTYKEDVTLPCLAVGLPPPVITWKIKGVQFTTSDKIRQQPDGSLFIRD 1365

Query: 590  KTKSHTGEISTNKEDESSTPNLVSDL 615
             ++++ GE S + E++    ++   L
Sbjct: 1366 VSRNNAGEYSCHVENDYGQDSVTHQL 1391


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.129    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,934
Number of Sequences: 317
Number of extensions: 6539
Number of successful extensions: 22
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 10
length of query: 696
length of database: 114,650
effective HSP length: 62
effective length of query: 634
effective length of database: 94,996
effective search space: 60227464
effective search space used: 60227464
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 46 (22.6 bits)