Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000861-TA|BGIBMGA000861-PA|undefined
         (149 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16710| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_53388| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=1.5)             29   1.6  
SB_4005| Best HMM Match : CAP_GLY (HMM E-Value=5.8e-17)                29   2.1  
SB_46775| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-27)           28   3.7  
SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041)          27   4.9  
SB_21913| Best HMM Match : C2 (HMM E-Value=0.31)                       27   6.4  

>SB_16710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 27/96 (28%), Positives = 58/96 (60%), Gaps = 3/96 (3%)

Query: 3   IDLLSKIVIAEDAIS-RVAELDFLALIWMKIDLLS-KIVIAEDAISRVAELDFLALILMK 60
           IDL++  V+A D +S  V  ++ +A+  + I++++ K+V+ E  +  V  ++ +A+ ++ 
Sbjct: 144 IDLVAIEVVAIDLVSIEVVAINLVAIDLVSIEVVAIKVVVIEVFVIDVVAIEVVAIEVVV 203

Query: 61  IDLLSMIVIS-EVAISRVAELDFLAVCVSTDDANAI 95
           IDL+S+ V++ EV    +  ++ +A+ V   D  AI
Sbjct: 204 IDLVSIEVVAIEVVAKELVAIEVVAIEVVVIDVIAI 239



 Score = 35.1 bits (77), Expect = 0.024
 Identities = 24/89 (26%), Positives = 51/89 (57%), Gaps = 2/89 (2%)

Query: 9   IVIAEDAISRVAELDFLALIWMKIDLLSKIVIAEDAIS-RVAELDFLALILMKIDLLSM- 66
           +V+ +D    V   D +A+  + IDL+S  V+A++ I+  +  ++ +A+ ++ IDL+S+ 
Sbjct: 31  VVVDDDDDDEVIVSDLVAIDVIAIDLVSIEVVAKEVIAIDLVSIEVVAIEVIAIDLVSIE 90

Query: 67  IVISEVAISRVAELDFLAVCVSTDDANAI 95
           +V  EV    +  ++ +A+ V   D  +I
Sbjct: 91  VVAKEVIAIDLVSIEVVAIEVIAIDLVSI 119


>SB_53388| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=1.5)
          Length = 239

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 9   IVIAEDAISRVAELDFLALIWM-KIDLLSKIVIAEDAISRVAELDFLALIL---MKIDLL 64
           I IA   +S +A +  +A+  +  I + S IVIA  + S +A   F+ + +   + I + 
Sbjct: 61  IAIASIIVSAIASIIVIAIASIIVIAIASLIVIAIASFSVIATASFIVIAIASVIVIAIA 120

Query: 65  SMIVISEVAISRVAELDFLAVCVST 89
           S+IVI+  +I  +    F+ + +++
Sbjct: 121 SIIVIAIASIIVITIASFIVIAIAS 145


>SB_4005| Best HMM Match : CAP_GLY (HMM E-Value=5.8e-17)
          Length = 560

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 81  DFLAVCVSTDDANAILLQRNFWRTFLPVYEIRRL--RIQKRDTVIRDV 126
           D+L  C STD   A  + R  W TF   Y++     R +K+ T   DV
Sbjct: 218 DYLTECFSTDREKAFAIYR--WLTFNVAYDVDGFFGRSEKKSTSAEDV 263


>SB_46775| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-27)
          Length = 317

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 62  DLLSMIVISEVAISRVAELDFLAVCVSTDDANAILLQRNFWRTF 105
           ++L ++ I+     ++ E DFLA+  +     A+  QRN W  F
Sbjct: 62  EILRLLQINATQRFKMKEEDFLAMIFNISSMTALSSQRNNWDVF 105


>SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041)
          Length = 988

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 4/99 (4%)

Query: 3   IDLLSKIVIAEDAISRVAELDFLALIWMKIDLL---SKIVIAEDAISRVAELDFLALILM 59
           I + S IV A  +I  +A    + ++   I ++   S IVIA  +I  +A + F+ + + 
Sbjct: 53  ISIASIIVTAIASIIVIAIASIIVIVIASIIVIAIASFIVIAIASIIVIAIVSFIVIAIA 112

Query: 60  KIDLLSMIVISEVAISRVAELDFLAVCVST-DDANAILL 97
            I +++++    +AI+ +  +  + V  S    A AI+L
Sbjct: 113 SIIVIAIVSFIVIAIASIMVIAIVRVVASAIATATAIVL 151


>SB_21913| Best HMM Match : C2 (HMM E-Value=0.31)
          Length = 987

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 27  LIWMKIDLLSKIVIAEDAISRVAELDFLALILMKIDLLSMIVISE-VAISRVAELDFLAV 85
           L+W+ + L+    I +DA+   + +DF   I++K  L S+I  S+  A+SR A+LD +  
Sbjct: 860 LLWVALALVQFAAIYKDALKVFSRVDF--SIIVKDFLNSVITDSKSKALSR-AKLDCITA 916

Query: 86  CVSTD 90
            V ++
Sbjct: 917 TVKSN 921


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.331    0.143    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,497
Number of Sequences: 59808
Number of extensions: 86972
Number of successful extensions: 228
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 11
length of query: 149
length of database: 16,821,457
effective HSP length: 76
effective length of query: 73
effective length of database: 12,276,049
effective search space: 896151577
effective search space used: 896151577
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 56 (26.6 bits)