GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000861-TA|BGIBMGA000861-PA|undefined
         (149 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    28   0.52 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   2.1  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    26   2.8  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   3.6  
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   3.6  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    25   4.8  

>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 28.3 bits (60), Expect = 0.52
 Identities = 11/28 (39%), Positives = 20/28 (71%)

Query: 63  LLSMIVISEVAISRVAELDFLAVCVSTD 90
           +++M VI E  ++R AE+ +  VC++TD
Sbjct: 195 IINMSVIPEAKLAREAEIAYQMVCMATD 222


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 5   LLSKIVIAEDAISRVAELDFLALIWMKIDLLSKIVIAEDAISRVAEL 51
           LLS   I    I ++  +D+ ++ W+    +SK    ED  S +  L
Sbjct: 199 LLSTDPIPSSCIHKIITVDYFSIYWISKCEISKCTTTEDIFSYLKNL 245


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 27  LIWMKIDLLSKIVIAEDAISRVA-ELDFLALILMKIDLLSMIVISEVAISRVAELDFLAV 85
           L+W K D  SK+VI E  + + + ++D  +L     ++  + V+ E+     ++  + A 
Sbjct: 846 LLWRKGDTPSKLVILETGMVKASYQMDRESL---SENITCLCVVGELPF--FSKTCYNAT 900

Query: 86  CVSTDDANAILLQRNFWRTFL 106
            V+  D+   +L R  W T L
Sbjct: 901 VVAELDSAVWILDREGWETML 921


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 25  LALIWMKIDLLSKIVIAEDAISRVAELDFLALILMKIDLLSMIVISEVAI 74
           LA+ W    LLS +    + +  +  L  L  IL   DL S  +++E A+
Sbjct: 513 LAITWYHQQLLSSMYPQNECVEILVSLVRLLYILSSEDLSSKFMLAENAL 562


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 80  LDFLAVCVSTDDANAILLQRNFWRTFLPVYEIRRLRIQK 118
           LDFL  C  +DD+N+I +   F    +   +I +  +QK
Sbjct: 240 LDFLESCFRSDDSNSITMASLFIGNLVRRDDIAKQLMQK 278


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 82  FLAVCVSTDDANAILLQRNFWRTFLPV 108
           F A  + TD A   + Q NF+R FL V
Sbjct: 237 FYAAMLETDHAKNPVFQDNFFRDFLKV 263


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.331    0.143    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 444,340
Number of Sequences: 5004
Number of extensions: 13244
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 7
length of query: 149
length of database: 2,362,478
effective HSP length: 67
effective length of query: 82
effective length of database: 2,027,210
effective search space: 166231220
effective search space used: 166231220
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 50 (24.2 bits)