GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000861-TA|BGIBMGA000861-PA|undefined
         (149 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0349 + 22565405-22566279,22567774-22569772,22570360-225704...    31   0.39 
11_06_0347 + 22555087-22555943,22556638-22558783                       29   1.2  
08_01_0463 - 4075037-4075316,4075997-4076151,4076818-4078861,408...    28   2.7  
11_06_0337 - 22454281-22456399,22458520-22459388                       28   3.6  
12_01_1028 + 10541350-10541685,10542140-10542828,10542896-10542998     27   6.3  

>11_06_0349 +
           22565405-22566279,22567774-22569772,22570360-22570478,
           22570835-22571117
          Length = 1091

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 89  TDDANAILLQRNFWRTFLPVYEIRRLRIQKRD 120
           + D N I +    W+T LP Y++RRL + K D
Sbjct: 530 SSDENFIAVIGGHWQTPLPSYKVRRLSVHKSD 561


>11_06_0347 + 22555087-22555943,22556638-22558783
          Length = 1000

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 91  DANAILLQRNFWRTFLPVYEIRRLRIQKRD 120
           D N I +  + W+T  P Y++RRL + K D
Sbjct: 525 DENFITVIGSHWQTPFPSYKVRRLSVHKSD 554


>08_01_0463 -
           4075037-4075316,4075997-4076151,4076818-4078861,
           4080757-4081589
          Length = 1103

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 3   IDLLSKIVIAED--AISRVAELDFLALIWMKIDLLSKIVIAEDAISRVAELDFLALILMK 60
           +DL  +IV  +D   + R+ EL  L L   K  ++S    A D   R           ++
Sbjct: 796 LDLQVQIVKEQDMETLGRLPELRHLKLCSCKTHVVSVEKAAGDGYFRKLRYFSTPCSFLR 855

Query: 61  IDLLSMIVISEVAISRVAELDFLAVCVSTDDANAI 95
            DL  +I  ++  + R+  L+F    +   DAN +
Sbjct: 856 FDLHGVICSTKTIMPRLESLEFFVRVLFLRDANLL 890


>11_06_0337 - 22454281-22456399,22458520-22459388
          Length = 995

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 91  DANAILLQRNFWRTFLPVYEIRRLRIQKRD 120
           + N I +  + W+T  P Y++RRL + K D
Sbjct: 529 EENFITVIGSHWQTPFPSYKVRRLSVHKSD 558


>12_01_1028 + 10541350-10541685,10542140-10542828,10542896-10542998
          Length = 375

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 6   LSKIVIAEDAISRVAELDFLALIWMKIDLLSKIVIAEDAISRVAEL 51
           L K  + E  ++  A +D L  +W+KI  + K+   ED+I  + EL
Sbjct: 274 LIKASVVETGMTEEA-VDELVAVWVKIYGIPKLARIEDSIKVIVEL 318


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.331    0.143    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,905
Number of Sequences: 37544
Number of extensions: 76056
Number of successful extensions: 206
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 203
Number of HSP's gapped (non-prelim): 5
length of query: 149
length of database: 14,793,348
effective HSP length: 76
effective length of query: 73
effective length of database: 11,940,004
effective search space: 871620292
effective search space used: 871620292
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 56 (26.6 bits)