GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000861-TA|BGIBMGA000861-PA|undefined
         (149 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024496-1|AAB70339.1|  542|Caenorhabditis elegans Hypothetical ...    27   5.6  
Z68750-2|CAA92967.2|  451|Caenorhabditis elegans Hypothetical pr...    26   9.8  
AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer ...    26   9.8  

>AF024496-1|AAB70339.1|  542|Caenorhabditis elegans Hypothetical
           protein ZC178.1 protein.
          Length = 542

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 10/77 (12%)

Query: 23  DFLALIWMKIDLLSKIVIAEDAISRVAE-LDFLALILMKIDLLSMIVISEVAISRVAELD 81
           D + ++  K+D +  ++  ED I  V E LD + L++   D++ ++         + ELD
Sbjct: 285 DTIGVVLEKLDSVELVMSVEDTIGVVREKLDSVELVMSVEDIIGVV---------LEELD 335

Query: 82  FLAVCVSTDDANAILLQ 98
            + + +S +D   ++L+
Sbjct: 336 SVELVMSVEDIIGVVLE 352


>Z68750-2|CAA92967.2|  451|Caenorhabditis elegans Hypothetical
           protein K01A6.6 protein.
          Length = 451

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 86  CVSTDDANAILLQRNFWRTFLPV 108
           C+  D A   ++ R+FW+ FLP+
Sbjct: 243 CMVRDGALINIVNRSFWKVFLPL 265


>AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 2, isoform a protein.
          Length = 1222

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 43  DAISRVAELDFLALILMK-IDLLSMIVISEVAISRVAELDFLAVCVSTDDANAILLQRN 100
           +   R+A   FL L++++ I  +S I     A+  V  L F A+    DDA   +  RN
Sbjct: 58  EQFQRIANFYFLVLMILQFIPQISSISWYSTAVPLVIVLAFSAIKDGYDDAQRHISDRN 116


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.331    0.143    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,302,013
Number of Sequences: 27539
Number of extensions: 66980
Number of successful extensions: 190
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 5
length of query: 149
length of database: 12,573,161
effective HSP length: 75
effective length of query: 74
effective length of database: 10,507,736
effective search space: 777572464
effective search space used: 777572464
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 55 (26.2 bits)