Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000861-TA|BGIBMGA000861-PA|undefined
(149 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g25141.1 68414.m03121 UDP-3-0-acyl N-acetylglucosamine deacet... 29 0.99
At1g24880.1 68414.m03111 UDP-3-0-acyl N-acetylglucosamine deacet... 29 0.99
At1g24793.1 68414.m03107 UDP-3-0-acyl N-acetylglucosamine deacet... 29 0.99
At1g25210.1 68414.m03129 UDP-3-O-acyl N-acetylglycosamine deacet... 28 2.3
At1g25054.1 68414.m03117 UDP-3-O-acyl N-acetylglycosamine deacet... 28 2.3
At1g63730.1 68414.m07212 disease resistance protein (TIR-NBS-LRR... 27 4.0
At4g20060.1 68417.m02935 expressed protein ; expression support... 27 7.0
At5g02520.1 68418.m00186 expressed protein 26 9.2
At3g13100.1 68416.m01640 ABC transporter family protein similar ... 26 9.2
At2g37290.1 68415.m04574 RabGAP/TBC domain-containing protein lo... 26 9.2
At2g20290.1 68415.m02370 myosin, putative similar to myosin (GI:... 26 9.2
>At1g25141.1 68414.m03121 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain;
Length = 925
Score = 29.5 bits (63), Expect = 0.99
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 46 SRVAELDFLALILMKIDLLSMIVISEVAISRVAELDFLAVCVSTDDANAIL 96
S+ E D + L + ++DLL+ +V ISRV D L +CV+ D++ ++
Sbjct: 584 SKEEEEDTMDLSIKQVDLLN-----QVEISRVYHCDGLLLCVAKDNSRVVV 629
>At1g24880.1 68414.m03111 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain; similar to ESTs dbj AV442495.1, gb|BE522756.1,
gb|T42945.1, gb|BE525268.1, gb|BE523201.1,
gb|BE526298.1, gb|T42945.1, gb|AA651584.1,
dbj|AV552951.1, dbj|AV547151.1, dbj|AV563142.1
Length = 905
Score = 29.5 bits (63), Expect = 0.99
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 46 SRVAELDFLALILMKIDLLSMIVISEVAISRVAELDFLAVCVSTDDANAIL 96
S+ E D + L + ++DLL+ +V ISRV D L +CV+ D++ ++
Sbjct: 564 SKEEEEDTMDLSIKQVDLLN-----QVEISRVYHCDGLLLCVAKDNSRVVV 609
>At1g24793.1 68414.m03107 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain; similar to ESTs dbj AV442495.1, gb|BE522756.1,
gb|T42945.1, gb|BE525268.1, gb|BE523201.1,
gb|BE526298.1, gb|T42945.1, gb|AA651584.1,
dbj|AV552951.1, dbj|AV547151.1, dbj|AV563142.1
Length = 925
Score = 29.5 bits (63), Expect = 0.99
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 46 SRVAELDFLALILMKIDLLSMIVISEVAISRVAELDFLAVCVSTDDANAIL 96
S+ E D + L + ++DLL+ +V ISRV D L +CV+ D++ ++
Sbjct: 584 SKEEEEDTMDLSIKQVDLLN-----QVEISRVYHCDGLLLCVAKDNSRVVV 629
>At1g25210.1 68414.m03129 UDP-3-O-acyl N-acetylglycosamine
deacetylase family protein contains Pfam domain PF03331:
UDP-3-O-acyl N-acetylglycosamine deacetylase
Length = 955
Score = 28.3 bits (60), Expect = 2.3
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 50 ELDFLALILMKIDLLSMIVISEVAISRVAELDFLAVCVSTDDANAIL 96
E D + L + ++DLL+ +V ISRV D L +CV+ D++ ++
Sbjct: 618 EEDTMDLSIKQVDLLN-----QVEISRVYHCDGLLLCVAKDNSRVVV 659
>At1g25054.1 68414.m03117 UDP-3-O-acyl N-acetylglycosamine
deacetylase family protein contains Pfam domain PF03331:
UDP-3-O-acyl N-acetylglycosamine deacetylase
Length = 949
Score = 28.3 bits (60), Expect = 2.3
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 50 ELDFLALILMKIDLLSMIVISEVAISRVAELDFLAVCVSTDDANAIL 96
E D + L + ++DLL+ +V ISRV D L +CV+ D++ ++
Sbjct: 612 EEDTMDLSIKQVDLLN-----QVEISRVYHCDGLLLCVAKDNSRVVV 653
>At1g63730.1 68414.m07212 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 966
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 5 LLSKIVIAEDAISRVAELDFLALIWMKIDLLSKIVIAEDAI 45
LL+ + I+ +A R+ L FL++ ++D ++ ++ED +
Sbjct: 537 LLNDVYISAEAFKRIRNLRFLSIYKTRLDTNVRLHLSEDMV 577
>At4g20060.1 68417.m02935 expressed protein ; expression supported
by MPSS
Length = 1134
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 74 ISRVAELDFLAVCVSTDDANAILLQRNFWRTF 105
+S VA++ + VS D +N IL++RN+W +
Sbjct: 577 VSLVADIVNYGI-VSLDCSNQILMERNYWPAY 607
>At5g02520.1 68418.m00186 expressed protein
Length = 236
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 101 FWRTFLPVYEIRRLRIQKRD 120
FWR +PVY++ R IQ +D
Sbjct: 192 FWRNQIPVYDMDRNLIQVKD 211
>At3g13100.1 68416.m01640 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1493
Score = 26.2 bits (55), Expect = 9.2
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 15 AISRVAELDFLALIWMKIDLLSKIVIAEDAISRVAELDFLALILMKIDLLSMIVISEVAI 74
A S V+ F A + +KI L S +IA A R+ + L D +SMIV ++V++
Sbjct: 540 APSFVSATAFGACMLLKIPLESGKIIAALATFRILQTPIYKLP----DTISMIVQTKVSL 595
Query: 75 SRVA 78
R+A
Sbjct: 596 DRIA 599
>At2g37290.1 68415.m04574 RabGAP/TBC domain-containing protein low
similarity to Rab6 GTPase activating protein, GAPCenA
[Homo sapiens] GI:12188746; contains Pfam profile
PF00566: TBC domain
Length = 882
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 27 LIWMKIDLLSKIVIAEDAISRVAELDFLALILMKID 62
++WMK++L + A+ R EL+ + ++K D
Sbjct: 663 VVWMKVELCRLLEEKRSAVMRAEELEIALMEMVKED 698
>At2g20290.1 68415.m02370 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1493
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 94 AILLQRNFWRTFLPVYEIRRLRIQKRDTVI 123
A + ++ WR L E+R+L+ RDTV+
Sbjct: 862 AAITTQSAWRARLARKELRKLKTDARDTVV 891
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.331 0.143 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,946
Number of Sequences: 28952
Number of extensions: 65293
Number of successful extensions: 216
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 205
Number of HSP's gapped (non-prelim): 13
length of query: 149
length of database: 12,070,560
effective HSP length: 75
effective length of query: 74
effective length of database: 9,899,160
effective search space: 732537840
effective search space used: 732537840
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 55 (26.2 bits)
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