Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000860-TA|BGIBMGA000860-PA|undefined
         (79 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9781| Best HMM Match : MarC (HMM E-Value=8.8)                       42   5e-05
SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45)            34   0.014
SB_9785| Best HMM Match : Cytochrom_B_C (HMM E-Value=7.5)              28   1.2  
SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.2  
SB_59279| Best HMM Match : SURF6 (HMM E-Value=3.5)                     27   2.1  
SB_5270| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.1  

>SB_9781| Best HMM Match : MarC (HMM E-Value=8.8)
          Length = 430

 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 5   KDSVITELITSFSVINNVKKIISTKQQGNLGLECVTGIKALSMIFILGGHACLF--IASG 62
           K  VITE   SFS+I N  +I+ T       +  + G++ LSM +++ GH  LF  +ASG
Sbjct: 303 KKHVITEFFLSFSIIRNTSRIMDTNVPPG-AITSINGMRVLSMFWVILGHTFLFMTLASG 361


>SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45)
          Length = 936

 Score = 34.3 bits (75), Expect = 0.014
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   KDSVITELITSFSVINNVKKIISTKQQGNLGLECVTGIKALSMIFILGGHACLF 58
           + S++ E    FS+I N  +I+ T       +  + G++ LSM +++ GH  ++
Sbjct: 317 RKSIVVEFFLCFSIIRNTSRIMDTNVPPG-AITSINGMRVLSMFWVILGHTFIW 369


>SB_9785| Best HMM Match : Cytochrom_B_C (HMM E-Value=7.5)
          Length = 190

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 8  VITELITSFSVINNVKKIISTKQQGNLGLECVTGIKALSMIFILGGHACLFIASGPVMD 66
          ++  L+  FS+  N  +I+      +  +  + G++ +SM +++ GH  L++ S  V++
Sbjct: 2  IVNRLLLCFSLTKNAGRIMDMDVPAD-AITSLNGMRFISMTWVILGHTYLWMLSTGVVN 59


>SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 4   KKDSVITELITSFSVINNVKKIISTKQQGNLGLECVTGIK 43
           K++++I +L +  S+INNV      K   +   +C T IK
Sbjct: 215 KRNTIIAQLKSELSMINNVTHEAQRKTLSDAAKQCSTEIK 254


>SB_59279| Best HMM Match : SURF6 (HMM E-Value=3.5)
          Length = 218

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 4  KKDSVITELITSFSVINNVKKIISTKQQGNLGLEC 38
          K DSV+ E + + + I ++++IIST++Q  L  EC
Sbjct: 45 KHDSVLEERLRN-TAIRHLEEIISTEEQERLIKEC 78


>SB_5270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 4   KKDSVITELITSFSVINNVKKIISTKQQGNLGLEC 38
           K DSV+ E + + + I ++++IIST++Q  L  EC
Sbjct: 428 KHDSVLEERLRN-TAIRHLEEIISTEEQERLIKEC 461


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,229
Number of Sequences: 59808
Number of extensions: 65088
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 6
length of query: 79
length of database: 16,821,457
effective HSP length: 57
effective length of query: 22
effective length of database: 13,412,401
effective search space: 295072822
effective search space used: 295072822
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)