GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000860-TA|BGIBMGA000860-PA|undefined
         (79 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    25   0.91 
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    23   3.7  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    23   4.8  
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    23   4.8  
SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    23   6.4  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    23   6.4  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    23   6.4  
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch...    23   6.4  
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    22   8.5  

>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 25.4 bits (53), Expect = 0.91
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 1   MGKKKDSVITELITSFSVINNVKKIISTKQQGNLGLECVTG 41
           M  K  +VI + ITS     N+K+I    ++ ++G E +TG
Sbjct: 102 MEVKDTNVINKSITSLWSSPNLKEIDGEDEKKSVGQESITG 142


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 18  VINNVKKIISTKQQGNLGLECVT 40
           +IN++K I      G   L+CVT
Sbjct: 376 IINSLKNIFEEDNLGKTSLKCVT 398


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 12   LITSFSVINNVKKIISTKQQGNLGLECVTG 41
            LIT F + + V ++ S +  G LGLE +TG
Sbjct: 2469 LITYFKIPSVVLRL-SYRGTGGLGLENITG 2497


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 22  VKKIISTKQQGNL-GLECVTGIKA-LSMIFILGGHACLFIASGPVMDATAWDRDLTVT 77
           V  ++ T   G+L G+E  T IK  L+ I  +G    +F AS P++DA     + +VT
Sbjct: 635 VSNVLITGGLGSLPGME--TRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVT 690


>SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 43  KALSMIFILGGHACLF 58
           K   ++FI GGHA +F
Sbjct: 98  KEFCIMFIAGGHAAMF 113


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 37  ECVTGIKALSMIFILGGHACLFIASGPVMD 66
           E    ++AL    +LG H  L  AS   MD
Sbjct: 773 EAANAMRALKNTHLLGRHLVLQYASNATMD 802


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)

Query: 11 ELITSFSVINNVKKIISTKQQGNLGLEC 38
          E+ T++S+INNV K+ S ++   + ++C
Sbjct: 42 EIWTAYSMINNV-KLCSNEKSFCIRIQC 68


>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 43  KALSMIFILGGHACLF 58
           K   ++F+ GGHA +F
Sbjct: 100 KDYQLLFVAGGHAAMF 115


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 115

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 32 GNLGLECVTGIKALSMIFIL 51
          GNLGL   + I  L++I +L
Sbjct: 52 GNLGLSLPSAINILTLIIVL 71


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 309,966
Number of Sequences: 5004
Number of extensions: 9165
Number of successful extensions: 32
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 9
length of query: 79
length of database: 2,362,478
effective HSP length: 59
effective length of query: 20
effective length of database: 2,067,242
effective search space: 41344840
effective search space used: 41344840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 45 (22.2 bits)