GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000860-TA|BGIBMGA000860-PA|undefined
         (79 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0261 + 1926458-1926523,1926959-1927144                           28   0.83 
06_01_0455 - 3241217-3243176,3244426-3244670,3244869-3245255           27   1.4  
03_02_0356 + 7769153-7769285,7769367-7769485,7769821-7770129           27   1.4  
06_01_0454 - 3234331-3236299,3237254-3238074                           27   2.5  
12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409...    26   3.3  
01_06_1248 - 35711763-35711791,35712358-35712433                       26   3.3  

>06_01_0261 + 1926458-1926523,1926959-1927144
          Length = 83

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 10/22 (45%), Positives = 17/22 (77%)

Query: 44 ALSMIFILGGHACLFIASGPVM 65
          ALS++F+L GH  +F+ S P++
Sbjct: 56 ALSVLFLLSGHWAMFLLSAPMV 77


>06_01_0455 - 3241217-3243176,3244426-3244670,3244869-3245255
          Length = 863

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 20  NNVKKIISTKQQGNLGLECVTGIKALS 46
           N VKKIIS+   GN  LE +  + ALS
Sbjct: 327 NEVKKIISSPIPGNKDLETMQSVLALS 353


>03_02_0356 + 7769153-7769285,7769367-7769485,7769821-7770129
          Length = 186

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 10/69 (14%)

Query: 10  TELITSFSVINNVK-KIISTKQQG-----NLGLECVT--GIKALSMIFILGGHACLFIAS 61
           ++L   F+V N  K KI ++ ++G     NL    VT  G KA+++ F+    AC  +A+
Sbjct: 67  SDLKIDFAVCNLAKLKIANSIREGQYCSYNLSYMAVTTTGSKAIAVAFLC--IACFALAA 124

Query: 62  GPVMDATAW 70
           G   DA  W
Sbjct: 125 GAAADAPRW 133


>06_01_0454 - 3234331-3236299,3237254-3238074
          Length = 929

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 20  NNVKKIISTKQQGNLGLECVTGIKALS 46
           N VKKIIS+   GN  LE +  + ALS
Sbjct: 390 NEVKKIISSPLPGNEYLETMQSVLALS 416


>12_02_0370 +
           18139557-18140469,18140561-18140704,18140804-18140956,
           18141032-18141147,18141231-18141398,18142110-18142334,
           18142458-18142577
          Length = 612

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 3   KKKDSVITELITSFSVINNVKKIISTKQQGNLGLECVTGIKAL 45
           K  DS +   +  FS +N +KK+       NL  E + G+K +
Sbjct: 417 KPLDSAVLSRLRQFSAMNKLKKMALRVIAENLSEEEIAGLKEM 459


>01_06_1248 - 35711763-35711791,35712358-35712433
          Length = 34

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 19 INNVKKIISTKQQGNLGLECVTG 41
          IN V  ++  +Q+  LG+ C+TG
Sbjct: 4  INGVGNLVGDRQEWRLGMTCLTG 26


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,830
Number of Sequences: 37544
Number of extensions: 57557
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 110
Number of HSP's gapped (non-prelim): 6
length of query: 79
length of database: 14,793,348
effective HSP length: 58
effective length of query: 21
effective length of database: 12,615,796
effective search space: 264931716
effective search space used: 264931716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)