GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000859-TA|BGIBMGA000859-PA|IPR002160|Proteinase
inhibitor I3, Kunitz legume
         (75 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874...    28   1.1  
03_06_0732 - 35788417-35788485,35788776-35788871,35788963-357891...    27   1.9  
09_06_0251 - 21859484-21862162                                         27   2.5  
04_04_0674 + 27173948-27174188,27174704-27175260,27175310-271753...    26   3.4  
12_02_0869 - 23844378-23844689,23844924-23845233,23845322-238454...    25   7.8  

>03_02_0473 +
           8745721-8745994,8746083-8746090,8746232-8746324,
           8746665-8746893,8747314-8747420,8747560-8747622,
           8747883-8747983,8748996-8749090,8749330-8749350,
           8749987-8750082,8750188-8750308,8750415-8750570,
           8750679-8750869,8751207-8751478,8751853-8751954,
           8752006-8752038,8752132-8752308,8752397-8752466,
           8752512-8752585,8752667-8752908,8752983-8753129,
           8753526-8753751,8753893-8753970,8754378-8754521,
           8754829-8755008,8755335-8755394,8755484-8755523,
           8758653-8759137
          Length = 1294

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 15  PVFDASAKSPQ--GLLFGSSYHLGNFDECVGIEDSNDNGVSVD 55
           PV  A+A+  Q  G    ++Y LG +DE   ++  +DN  S+D
Sbjct: 466 PVLHAAARVVQEMGKSRAAAYSLGAYDEAANLQSYSDNVESLD 508


>03_06_0732 -
           35788417-35788485,35788776-35788871,35788963-35789148,
           35789898-35789959,35790063-35790304,35790418-35791517
          Length = 584

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 21  AKSPQGLLFGSSYHLGNFDE---CVGIEDSNDNGV 52
           AK  QG ++G   HL   +    CVG+ D ++NG+
Sbjct: 344 AKPLQGPMYGVGAHLAPANSSNICVGLSDIDENGI 378


>09_06_0251 - 21859484-21862162
          Length = 892

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 3   AIPQDNRRIEIFPVFDASAKSPQGLLFGSSYHLGNFDEC-VGIEDSNDNGVSVDGQY 58
           A P+ N    I      +  + +G+ F   Y++ ++ EC +G ++S  +GV  D  Y
Sbjct: 210 ADPKANSPAMIHSDVAVAGFTEEGMPFAEDYYITDYSECTLGTDESPVSGVCPDKVY 266


>04_04_0674 +
           27173948-27174188,27174704-27175260,27175310-27175399,
           27175475-27175714,27175801-27176022,27176124-27176433,
           27176528-27176847,27176906-27177021,27177133-27177227,
           27177331-27177407,27177520-27177615
          Length = 787

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/22 (45%), Positives = 17/22 (77%)

Query: 32  SYHLGNFDECVGIEDSNDNGVS 53
           SY + NFD+ + +EDSN+ G++
Sbjct: 303 SYGVENFDDLLLVEDSNNPGMN 324


>12_02_0869 -
           23844378-23844689,23844924-23845233,23845322-23845447,
           23845522-23845727,23845832-23845964,23846045-23846208,
           23846856-23846948,23847074-23847196,23847318-23847384,
           23847473-23847564,23847667-23847779,23847796-23847845,
           23848098-23848189
          Length = 626

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 30  GSSYHLGNFDECVGIEDSNDNGVSVDGQYCLATIKWQHEENKDFG 74
           GS ++ G F     +        + D ++  + IKW +  + D+G
Sbjct: 530 GSDHYSGPFTATTHVVVGGAGAGTSDSEFTTSNIKWSYYRDFDYG 574


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.137    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,031
Number of Sequences: 37544
Number of extensions: 87923
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 5
length of query: 75
length of database: 14,793,348
effective HSP length: 54
effective length of query: 21
effective length of database: 12,765,972
effective search space: 268085412
effective search space used: 268085412
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)