GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000857-TA|BGIBMGA000857-PA|undefined
         (63 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    24   2.2  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    24   2.9  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    23   5.0  

>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 37  IRGKSLRTAACPYRSDAC 54
           +RGK L  AA  YR  AC
Sbjct: 96  VRGKKLGPAATKYRKGAC 113


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 14/44 (31%), Positives = 18/44 (40%)

Query: 12  LSTVEPTAMEAKTVQPMVLAFQNRSIRGKSLRTAACPYRSDACA 55
           +S   P  +   T    VL  Q RS R + L+   C Y    CA
Sbjct: 234 MSCRRPKLVPQATRLTEVLERQQRSDRERRLKQKQCDYLQTVCA 277


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 2   LMSYQWMARYLSTVEPTAMEAKTVQPMVLAFQNRSIRGKS 41
           L S Q +    +T+EPTA     VQ   L F  R + G++
Sbjct: 707 LFSDQTIGSITNTIEPTAAAKNVVQ--FLGFHMRILVGRA 744


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.124    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,624
Number of Sequences: 5004
Number of extensions: 5498
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 63
length of database: 2,362,478
effective HSP length: 43
effective length of query: 20
effective length of database: 2,147,306
effective search space: 42946120
effective search space used: 42946120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 45 (22.2 bits)