GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000857-TA|BGIBMGA000857-PA|undefined
         (63 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-9|AAN65327.1|  632|Caenorhabditis elegans Biotin protein ...    28   0.71 
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ...    28   0.71 
AY601656-1|AAS98221.1|  632|Caenorhabditis elegans biotin protei...    28   0.71 
AF100669-9|AAK39269.1|  605|Caenorhabditis elegans Dipeptidyl pe...    27   1.6  
Z75537-1|CAA99834.1|  455|Caenorhabditis elegans Hypothetical pr...    25   5.0  
AF125962-1|AAD14741.1|  341|Caenorhabditis elegans Seven tm rece...    25   8.7  

>U23139-9|AAN65327.1|  632|Caenorhabditis elegans Biotin protein
          ligase protein 1,isoform b protein.
          Length = 632

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 18 TAMEAKTVQPMVLAFQNRSIRGKSLRTAACPYRSDACASDTRSIP 62
          T    ++V P    +QNRS+RG    +AA P+R     S  R +P
Sbjct: 18 TGDRGRSVSPSFEYYQNRSLRG--FTSAANPHRVATRNSTVRQVP 60


>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform a protein.
          Length = 1051

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 10  RYLSTVEPTAMEAKTVQPMVLAFQNRSIRGKSLRTAACPYRSDACASDTRSIP 62
           R  S     +   ++V P    +QNRS+RG    +AA P+R     S  R +P
Sbjct: 429 RRFSAFSTESDRGRSVSPSFEYYQNRSLRG--FTSAANPHRVATRNSTVRQVP 479


>AY601656-1|AAS98221.1|  632|Caenorhabditis elegans biotin protein
          ligase, holocarboxylasesynthetase (70.9 kD) alternative
          variant b protein.
          Length = 632

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 18 TAMEAKTVQPMVLAFQNRSIRGKSLRTAACPYRSDACASDTRSIP 62
          T    ++V P    +QNRS+RG    +AA P+R     S  R +P
Sbjct: 18 TGDRGRSVSPSFEYYQNRSLRG--FTSAANPHRVATRNSTVRQVP 60


>AF100669-9|AAK39269.1|  605|Caenorhabditis elegans Dipeptidyl
           peptidase four (iv)family protein 7, isoform a protein.
          Length = 605

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 9   ARYLSTVEPTAMEAKTVQPMVLAFQNRS 36
           A +L  VEP +  ++ V PM++  +N+S
Sbjct: 518 AEFLKDVEPVSHASEIVTPMLIVLENKS 545


>Z75537-1|CAA99834.1|  455|Caenorhabditis elegans Hypothetical
           protein F18E2.1 protein.
          Length = 455

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 1   MLMSYQWMARYLSTVEPTAMEAKTVQPMVLAFQNRSIRGKSLRTAAC 47
           ++  Y W+ R L+T    A   +   P +  FQ+R     ++ +A C
Sbjct: 243 VMTQYDWLKRDLTT----ANSNRAAHPWIFTFQHRPFYCSNVNSAEC 285


>AF125962-1|AAD14741.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 113 protein.
          Length = 341

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 25  VQPMVLAFQNRSIRGKSLRTAACPYRSDA 53
           + P+VL F  R  R   LR   C YRS++
Sbjct: 296 IDPVVLIFIIRDFRQTILRPFRCFYRSNS 324


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.124    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,294,701
Number of Sequences: 27539
Number of extensions: 30034
Number of successful extensions: 48
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 6
length of query: 63
length of database: 12,573,161
effective HSP length: 43
effective length of query: 20
effective length of database: 11,388,984
effective search space: 227779680
effective search space used: 227779680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 51 (24.6 bits)