GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000856-TA|BGIBMGA000856-PA|undefined
         (369 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    33   0.002
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    30   0.023
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       28   0.093
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    23   4.6  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    23   4.6  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   8.1  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 309 ACTARKGTAAYGGACHILNTQ-GPCPDGSWLVKEGTGKVKCQCRPGRVPPECNGDID 364
           +C+   GT  Y    ++ + + G C +    + +  G  +C+C PG V P C GDI+
Sbjct: 245 SCSCPSGTLGYICEINVDDCRPGACHNNGTCLDK-VGGFECKCPPGFVGPRCEGDIN 300



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 328 TQGPCPDGSWLVKEGTGKVKCQCRPGRVPPECNGDID 364
           T+  C +G   + +G     C C+PG     C   I+
Sbjct: 28  TETSCMNGGTCI-DGINSYICTCKPGFTGSNCQNRIN 63



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 33  ECKCPPG 39
           ECKCPPG
Sbjct: 283 ECKCPPG 289



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/32 (34%), Positives = 12/32 (37%), Gaps = 1/32 (3%)

Query: 103 YRLSQGPCYPGAILDIGDDGLANCTCDPDSRN 134
           Y     PC  G +  I D G   C C P   N
Sbjct: 378 YDCDSNPCQNGGVCRISDGGGYICDC-PSGTN 408


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 30.3 bits (65), Expect = 0.023
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 56  GPCRAGEYFAPVEESFNKRGERQGMCVRPQQCADETLLYWPADGKCYYRLSQGPCYPGAI 115
           G CR+   F+  +        R G+      CA E +++ P  GKC Y L +  C PG I
Sbjct: 558 GTCRSEGIFSDPKNCAAYYVCRSGLSYH-LSCA-ENMMFDPMSGKCEYSLGE-KCRPGQI 614

Query: 116 LDIGD 120
           + + +
Sbjct: 615 IQVAN 619


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 28.3 bits (60), Expect = 0.093
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 296 VCGSGSCNRKEVEACTARKGTAAYGGACHILNTQGPCPDGSWLVKEGTGKVKCQCRPGRV 355
           +C +  C+  EVE+C A    +    A  I    G C +       G G  +CQC+PG  
Sbjct: 9   ICDNPPCD-DEVESCIAVGVGSGRNSAPSICGEHGHCVN-----LPGVGH-RCQCQPGFT 61

Query: 356 PPECNGDID 364
              C+ +I+
Sbjct: 62  GKYCHENIN 70


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
          protein.
          Length = 237

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 35 KCPPGTAQLPHTTTCHKLFE 54
          KCP      PH T+C K ++
Sbjct: 24 KCPDDFGFYPHHTSCDKYWK 43


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
          protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 35 KCPPGTAQLPHTTTCHKLFE 54
          KCP      PH T+C K ++
Sbjct: 24 KCPDDFGFYPHHTSCDKYWK 43


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)

Query: 254 YVPERRRCYRP 264
           YVP  R CYRP
Sbjct: 252 YVPFYRYCYRP 262


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.141    0.492 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,139
Number of Sequences: 317
Number of extensions: 5054
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 10
length of query: 369
length of database: 114,650
effective HSP length: 58
effective length of query: 311
effective length of database: 96,264
effective search space: 29938104
effective search space used: 29938104
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)