GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000856-TA|BGIBMGA000856-PA|undefined
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0037 - 6260171-6260382,6260657-6260723                           32   0.84 
08_02_0099 + 12343518-12343678,12344193-12344393,12344669-123448...    30   2.6  
02_01_0023 + 146841-147002,147962-148036,148181-148234,148284-14...    30   2.6  
02_05_0752 + 31491462-31491921,31492177-31492271,31492346-314925...    29   4.5  
03_02_0127 + 5777564-5779879                                           29   6.0  
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    29   7.9  

>02_02_0037 - 6260171-6260382,6260657-6260723
          Length = 92

 Score = 31.9 bits (69), Expect = 0.84
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 78  QGMCVRPQQCADETLLYWPADGKCYY 103
           +G+C+R Q C +E +L    DGKC Y
Sbjct: 44  KGLCLRSQNCDNECMLEGYMDGKCKY 69


>08_02_0099 +
           12343518-12343678,12344193-12344393,12344669-12344846,
           12347201-12347463,12347596-12347874,12348045-12349182,
           12349303-12349473
          Length = 796

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 31  IAECK-CPPGTAQLPHTTTCHKL--FERGPCRAGEY 63
           +A C+ CP   A  P   TCH L  F R  C AG Y
Sbjct: 388 LAPCRPCPTAGAPSPPNGTCHSLNRFRRFHCPAGHY 423


>02_01_0023 +
           146841-147002,147962-148036,148181-148234,148284-148388,
           148736-148836,148937-148992,149284-149324,149427-149527,
           149629-149724,149905-149969,150048-150119,150537-150772,
           150874-150904,151020-151165,151264-151365,151469-151513,
           151614-151780,151812-152214
          Length = 685

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 330 GPCPDGSWLVKEGTGKVKC 348
           G CP GSW+V++  G   C
Sbjct: 556 GVCPQGSWIVRQSVGSTPC 574


>02_05_0752 +
           31491462-31491921,31492177-31492271,31492346-31492573,
           31493070-31493157,31493275-31493326,31493985-31494050,
           31494382-31494536,31494633-31494703,31494820-31495017,
           31495103-31495144,31496223-31496324,31496514-31496603,
           31496708-31496783,31497299-31497395,31497488-31497557,
           31497676-31497852,31498156-31498239,31498971-31499093,
           31500143-31500226,31500318-31500502,31500592-31500730,
           31500841-31500900,31500969-31501040,31501136-31501197,
           31501839-31501945,31501984-31502058,31502800-31503248
          Length = 1168

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 2   MHNLIDESRKGHPCPETQELSPGRWGGRTIAECKCPPGTA 41
           +H L++E +KG PC +   L P R      A+ K  P  +
Sbjct: 905 VHELLEEEKKGGPCSQNTGLRPLRLDDFIQAKAKVSPSVS 944


>03_02_0127 + 5777564-5779879
          Length = 771

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 200 TAQGSKAECKCKSFHARAADGACYRLYTRG---PCEQDEMIA-RGGRCIKVP 247
           +A GS+ + K    + RA+ G+C+ L   G   P E+++ ++  GGR  K+P
Sbjct: 19  SASGSRKDEKTTPHYLRASTGSCHNLCKYGHKNPFEEEKKLSTSGGRRKKLP 70


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 17/67 (25%), Positives = 24/67 (35%)

Query: 256 PERRRCYRPGTPEPCPVGEVVAFDFDARPALDGLSHNGVCVCGSGSCNRKEVEACTARKG 315
           P R +       + C V EVV    D   A + +  + +   GS  C    V+      G
Sbjct: 244 PARGKAEFGDVDDVCGVSEVVMAKMDGAAAAETVGESSMLTIGSSICGSNHVQTPPVGNG 303

Query: 316 TAAYGGA 322
            A  G A
Sbjct: 304 KAGAGTA 310


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.141    0.492 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,565,565
Number of Sequences: 37544
Number of extensions: 754750
Number of successful extensions: 1236
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1230
Number of HSP's gapped (non-prelim): 8
length of query: 369
length of database: 14,793,348
effective HSP length: 83
effective length of query: 286
effective length of database: 11,677,196
effective search space: 3339678056
effective search space used: 3339678056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)