Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000856-TA|BGIBMGA000856-PA|undefined
(369 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62660.1 68416.m07039 glycosyl transferase family 8 protein l... 31 1.6
At2g23240.1 68415.m02775 plant EC metallothionein-like family 15... 31 1.6
At2g23240.2 68415.m02776 plant EC metallothionein-like family 15... 30 2.8
At4g05530.1 68417.m00842 short-chain dehydrogenase/reductase (SD... 29 3.8
At5g24400.1 68418.m02876 glucosamine/galactosamine-6-phosphate i... 29 6.6
At5g57810.1 68418.m07229 senescence-associated protein-related s... 28 8.7
At4g24480.1 68417.m03509 serine/threonine protein kinase, putati... 28 8.7
>At3g62660.1 68416.m07039 glycosyl transferase family 8 protein low
similarity to glycosyl transferase lgtC - Neisseria
gonorrhoeae, EMBL:AF208062; contains Pfam glycosyl
transferase family 8 domain PF01501
Length = 361
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 60 AGEYFAPVEESFNKRG----ERQGMCVRPQQCADETLLYWPADGKCYYRL-SQGPC 110
AGE AP+E +N+ G +G C R +LL+W GK ++RL S+ PC
Sbjct: 291 AGEV-APIEHRWNQHGLGGDNVRGSC-RDLHPGPVSLLHWSGSGKPWFRLDSRRPC 344
>At2g23240.1 68415.m02775 plant EC metallothionein-like family 15
protein identical to EC protein homolog 2 (SP:Q42377)
{Arabidopsis thaliana}; identical to an EST:
GB:X92116:ATECPRHOM; contains a vertebrate
metallothionein signature (PS00203); contains Pfam
profile PF02068: Plant PEC family metallothionein
Length = 85
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 263 RPGTPEPCPVGEVVAFDFDARPALDGLSHNGVCVCGS----GSCNRKEVEACTARKG-TA 317
R G P PCP GE + + HN C CG CN + + T+ KG T
Sbjct: 16 RCGCPSPCPGGESCRCKMMSEASGGDQEHN-TCPCGEHCGCNPCNCPKTQTQTSAKGCTC 74
Query: 318 AYGGAC 323
G C
Sbjct: 75 GEGCTC 80
>At2g23240.2 68415.m02776 plant EC metallothionein-like family 15
protein identical to EC protein homolog 2 (SP:Q42377)
{Arabidopsis thaliana}; identical to an EST:
GB:X92116:ATECPRHOM; contains a vertebrate
metallothionein signature (PS00203); contains Pfam
profile PF02068: Plant PEC family metallothionein
Length = 84
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 263 RPGTPEPCPVGEVVAFDFDARPALDGLSHNGVC--VCGSGSCNRKEVEACTARKG-TAAY 319
R G P PCP GE D + C CG CN + + T+ KG T
Sbjct: 16 RCGCPSPCPGGESCRLMMSEASGGDQEHNTCPCGEHCGCNPCNCPKTQTQTSAKGCTCGE 75
Query: 320 GGAC 323
G C
Sbjct: 76 GCTC 79
>At4g05530.1 68417.m00842 short-chain dehydrogenase/reductase (SDR)
family protein similar to peroxisomal short-chain
alcohol dehydrogenase GI:4105190 from [Homo sapiens]
Length = 254
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 276 VAFDFDARPALDGLSHNGVCVCGSGSCNRKEVEACTARKGTAAYGGACHILNTQ 329
+ F R L+G S V V N E A KG AYG CH+ N Q
Sbjct: 23 IGFGITERFGLEGAS---VVVSSRKQANVDEAVAKLKSKGIDAYGIVCHVSNAQ 73
>At5g24400.1 68418.m02876 glucosamine/galactosamine-6-phosphate
isomerase family protein low similarity to SP|O95336
6-phosphogluconolactonase (EC 3.1.1.31) (6PGL) {Homo
sapiens}; contains Pfam profile PF01182:
Glucosamine-6-phosphate
isomerase/6-phosphogluconolactonase
Length = 325
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 269 PCPVGEVVAFDFDARPALDGLSHNGVCVCGSGSCNRKEVEACTARKGTAAYGGA 322
P P E + F F P ++ +H + VCGSG + VEA + G G+
Sbjct: 258 PKPPSERITFTF---PVINSSAHVALVVCGSGKA--EAVEAALKKTGNVPPAGS 306
>At5g57810.1 68418.m07229 senescence-associated protein-related
similar to senescence-associated protein 5 [Hemerocallis
hybrid cultivar] gi|3551954|gb|AAC34855
Length = 317
Score = 28.3 bits (60), Expect = 8.7
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 15/94 (15%)
Query: 52 LFERGPCRAGEYFAPVEESFNKRGE---RQGMCVRPQQCADETL--LYWPADGKCYYRLS 106
++++G C Y +P E+ +N+R + G C+ P+ C + + +W Y R
Sbjct: 180 VYDKGACNDLIYGSPNEKPYNRRKMPPIKNGCCMPPETCNMDAINATFW------YRRKD 233
Query: 107 QGPCYPGAI-LDIGDDGLANCTCDPDS-RNFWPL 138
+GP P ++ L GD+ + D RN W +
Sbjct: 234 EGP--PSSMNLMYGDEMMVGRISDCQLWRNDWSI 265
>At4g24480.1 68417.m03509 serine/threonine protein kinase, putative
similar to serine/threonine-protein kinase CTR1
[Arabidopsis thaliana] SWISS-PROT:Q05609
Length = 963
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 191 GHTFRITQVTAQGSKAECKCKSFHARAADGACYRLYTRGPCEQDEMIARG 240
G+ ++T S+A C+S H ++ + YR + G + I+ G
Sbjct: 251 GYYLQVTLAKWLSSQANLACESVHIQSTESISYRFWVSGCLSYSDKISDG 300
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.141 0.492
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,702,115
Number of Sequences: 28952
Number of extensions: 509163
Number of successful extensions: 631
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 628
Number of HSP's gapped (non-prelim): 8
length of query: 369
length of database: 12,070,560
effective HSP length: 82
effective length of query: 287
effective length of database: 9,696,496
effective search space: 2782894352
effective search space used: 2782894352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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