Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000855-TA|BGIBMGA000855-PA|IPR011046|WD40-like
         (1605 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    27   0.78 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    25   3.2  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   4.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   4.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   4.2  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    25   5.5  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    25   5.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   5.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   5.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   5.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   5.5  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    25   5.5  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           25   5.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   9.7  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    24   9.7  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
            transcription factor protein.
          Length = 249

 Score = 27.5 bits (58), Expect = 0.78
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 982  EENAISGRQTENNTVKQTDKIVSEKPAEKSILDKREKARSKKSSPRLSKEIAGVSEKVPS 1041
            + NAI     +      T ++   + + K I++KR +AR   S   L   I    +K P+
Sbjct: 11   QPNAIPTTNNQIEMAAATKRVSDNRRSNKPIMEKRRRARINNSLNELKTLILDAMKKDPA 70


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 361 NPHPCGPSLASVHHLYILHRGDTTAKVQDIAISPDSRWTAISTLRGTTHVFAVSPYG 417
           +P      L   H +  +   D  +    I +SP+SR        G ++ + V P+G
Sbjct: 374 SPPAADELLRRFHEIRYMSTIDLRSSYWQIPLSPESRQYTAFLYNGRSYTYQVLPFG 430


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
            transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 1309 KENATSKQKKNKSLSP-YTERRKSTEKFTETEVKDVYVIDSTQEEFPEIQITRGNKSRKK 1367
            K++ TS   KN  LS  + +   S +     E+    +  S  +E P+I  TRGN +   
Sbjct: 74   KDSITSDGGKNGKLSDKFLDDEMSKKSCQGCEMPSAGLCGS-HDEIPDISSTRGNNNNTP 132

Query: 1368 S 1368
            S
Sbjct: 133  S 133


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
            ortholog protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 1309 KENATSKQKKNKSLSP-YTERRKSTEKFTETEVKDVYVIDSTQEEFPEIQITRGNKSRKK 1367
            K++ TS   KN  LS  + +   S +     E+    +  S  +E P+I  TRGN +   
Sbjct: 22   KDSITSDGGKNGKLSDKFLDDEMSKKSCQGCEMPSAGLCGS-HDEIPDISSTRGNNNNTP 80

Query: 1368 S 1368
            S
Sbjct: 81   S 81


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
            ortholog protein.
          Length = 477

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 1309 KENATSKQKKNKSLSP-YTERRKSTEKFTETEVKDVYVIDSTQEEFPEIQITRGNKSRKK 1367
            K++ TS   KN  LS  + +   S +     E+    +  S  +E P+I  TRGN +   
Sbjct: 205  KDSITSDGGKNGKLSDKFLDDEMSKKSCQGCEMPSAGLCGS-HDEIPDISSTRGNNNNTP 263

Query: 1368 S 1368
            S
Sbjct: 264  S 264


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 8/30 (26%), Positives = 16/30 (53%)

Query: 1520 EKVPPTQEKGFSFVENDKITTQEVKIDDEP 1549
            +K PP Q + F   +N+  + +E  + + P
Sbjct: 136  KKTPPNQYENFQQYDNNNFSAEENSVSEPP 165


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 908 KPVEKNIHKVQHAKKKPDKQAEKNIPEKQVEKRISEKQAERDVYEKHDQLYVSEREVEKR 967
           +P      + +  KK   KQ      EK+     S  Q  R  +E  +  Y++ER    R
Sbjct: 202 RPSSGRSPRTRRVKKPGAKQGAPTAEEKRPRTAFSGAQLARLKHEFAENRYLTER----R 257

Query: 968 KSEAQSEENIGERQ 981
           + +  +E  + E Q
Sbjct: 258 RQQLSAELGLNEAQ 271



 Score = 23.8 bits (49), Expect = 9.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 1346 IDSTQEEFPEIQITRGNKSRKKSPQPVEFKNQESDLN 1382
            ID       +  ++ GN++      P+ FKN ES LN
Sbjct: 14   IDHNSCSSDDTVLSVGNENPPPEDTPLSFKNIESHLN 50


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 770 PLPRTTTIPVQTLSADDGLQRFPADFFYDSFAPYI 804
           P+  T  + +  L A  GL+     FF+D+  PY+
Sbjct: 411 PVNLTIPVSISLLIAACGLRNGDPCFFHDTIPPYL 445


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 770 PLPRTTTIPVQTLSADDGLQRFPADFFYDSFAPYI 804
           P+  T  + +  L A  GL+     FF+D+  PY+
Sbjct: 411 PVNLTIPVSISLLIAACGLRNGDPCFFHDTIPPYL 445


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 770 PLPRTTTIPVQTLSADDGLQRFPADFFYDSFAPYI 804
           P+  T  + +  L A  GL+     FF+D+  PY+
Sbjct: 411 PVNLTIPVSISLLIAACGLRNGDPCFFHDTIPPYL 445


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 770 PLPRTTTIPVQTLSADDGLQRFPADFFYDSFAPYI 804
           P+  T  + +  L A  GL+     FF+D+  PY+
Sbjct: 411 PVNLTIPVSISLLIAACGLRNGDPCFFHDTIPPYL 445


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
            transcription factor Fushitarazu protein.
          Length = 290

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 8/30 (26%), Positives = 16/30 (53%)

Query: 1520 EKVPPTQEKGFSFVENDKITTQEVKIDDEP 1549
            +K PP Q + F   +N+  + +E  + + P
Sbjct: 136  KKTPPNQYENFQQYDNNNFSAEENSVSEPP 165


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 8/30 (26%), Positives = 16/30 (53%)

Query: 1520 EKVPPTQEKGFSFVENDKITTQEVKIDDEP 1549
            +K PP Q + F   +N+  + +E  + + P
Sbjct: 136  KKTPPNQYENFQQYDNNNFSAEENSVSEPP 165


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 12/54 (22%), Positives = 20/54 (37%)

Query: 812  RESVNVIERELCGVFPPDRPLTDMTPTPDSKASDISFKSSDANEYKGFVEVGNY 865
            +E+     REL   F P   L     +P     D  +     ++Y  ++ V  Y
Sbjct: 2460 KEAFAAFVRELSAAFKPKNLLLSAAVSPSKAVMDAGYDVPALSQYLDWIAVMTY 2513


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
            homeodomain protein protein.
          Length = 232

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 1063 VEETVTVTVSNKSKSQKTYISKSEN-EVKDNTKTADDD 1099
            +EET T   S  S S ++ +SK E+ EV+      DDD
Sbjct: 1    MEETKTEIKSKISFSVESLLSKKEDEEVEHRLSDRDDD 38


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.129    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 329,204
Number of Sequences: 317
Number of extensions: 13588
Number of successful extensions: 34
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 16
length of query: 1605
length of database: 114,650
effective HSP length: 66
effective length of query: 1539
effective length of database: 93,728
effective search space: 144247392
effective search space used: 144247392
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 49 (23.8 bits)