Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000854-TA|BGIBMGA000854-PA|IPR004853|Protein of unknown
function DUF250
         (242 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    30   0.019
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    30   0.019
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    27   0.17 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   0.53 
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    25   0.70 
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    25   0.70 
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    24   0.92 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    24   1.2  
AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine 3-mon...    23   2.8  
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    23   2.8  
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    23   2.8  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    22   4.9  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    21   6.5  

>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 29.9 bits (64), Expect = 0.019
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 86  GSLMLSLYSIFTKKVLPYVNQEVLLLSYYNNAYSIILFIPLMLINGEMTVLMNYTNFQST 145
           G+   SL+ +F   +LPY    ++ L Y +  Y  IL +   L+N  +  L+  TN  S 
Sbjct: 171 GTKTYSLFIVFMTVILPYFINLLMELQYCH--YLNILRVRYQLLNEYLETLVQETNRTSV 228

Query: 146 YFW 148
             W
Sbjct: 229 EGW 231


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 29.9 bits (64), Expect = 0.019
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 86  GSLMLSLYSIFTKKVLPYVNQEVLLLSYYNNAYSIILFIPLMLINGEMTVLMNYTNFQST 145
           G+   SL+ +F   +LPY    ++ L Y +  Y  IL +   L+N  +  L+  TN  S 
Sbjct: 171 GTKTYSLFIVFMTVILPYFINLLMELQYCH--YLNILRVRYQLLNEYLETLVQETNRTSV 228

Query: 146 YFW 148
             W
Sbjct: 229 EGW 231


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 58  ILCCAFIIFG----FYLGVDQENLLGTIYGVVGSLMLSLYSIFTKKVLPYVNQEVLLLSY 113
           + CCAFI F     F L +D   L       +     S + IFT  +L Y    +LL  Y
Sbjct: 181 LFCCAFIFFNMHLLFLLCLDYFTLHLLFLPCI-YYFYSAFIIFTIHLLFYCVLIILLCIY 239

Query: 114 YNNAYSIILFIPLMLI 129
           Y   Y+ ILF   +L+
Sbjct: 240 Y-FYYAFILFTVHLLL 254



 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 58  ILCCAFIIFGFYL 70
           + CCAFIIF  +L
Sbjct: 267 LFCCAFIIFTMHL 279


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 199 SKNALWWTSNLIVLASSALYARFKQLEME 227
           S N L WT  + V      Y++F+ LE+E
Sbjct: 231 SGNPLEWTGQVTVRKKRKPYSKFQTLELE 259


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 93  YSIFTKKVLPYVNQEVLLLSYYNNAYSIILFIPLMLINGEMT 134
           Y IF   VL  +N ++  +  YN+ + +++   L    G++T
Sbjct: 206 YDIFKALVLQTINLQITFIWTYNDLFVMLISTALAYRFGQIT 247


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 93  YSIFTKKVLPYVNQEVLLLSYYNNAYSIILFIPLMLINGEMT 134
           Y IF   VL  +N ++  +  YN+ + +++   L    G++T
Sbjct: 206 YDIFKALVLQTINLQITFIWTYNDLFVMLISTALAYRFGQIT 247


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 9/37 (24%), Positives = 21/37 (56%)

Query: 197 NESKNALWWTSNLIVLASSALYARFKQLEMEVKSKTP 233
           NE++  L W S LI+ ++ +L  + +   +++  + P
Sbjct: 593 NEARATLNWVSKLIIRSNPSLEEKLQIFALQLTHRAP 629


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 167 LQIKVTSPLTHNISGTAKACAQ-TVIATQWYNESKNALWWTSNLIVLASSALYARFKQLE 225
           L+IK+   L   ++   K   + T++   W NE +  + + +N I+L +   +  F    
Sbjct: 155 LEIKIDEHLYPVVALVVKNLIKPTILGADWLNEQRAVIDFDNNEILLRNGEKHHSF---- 210

Query: 226 MEVKSKTPVPEEKQSLV 242
              +  T +P E +  V
Sbjct: 211 -PFRKTTEIPPEPEDYV 226


>AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 212

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 174 PLTHNISGTAKACAQTVIATQWYNESKNALWWTSNLIVLASSALYA 219
           PL ++++ +     Q V   +W N+      WT  L+   +SAL+A
Sbjct: 162 PLCNSVTFSNFGYKQCVENRKWQNKVIQKFLWTGGLV---TSALFA 204


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 174 PLTHNISGTAKACAQTVIATQWYNESKNALWWTSNLIVLASSALYA 219
           PL ++++ +     Q V   +W N+      WT  L+   +SAL+A
Sbjct: 395 PLCNSVTFSNFGYKQCVENRKWQNKVIQKFLWTGGLV---TSALFA 437


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 174 PLTHNISGTAKACAQTVIATQWYNESKNALWWTSNLIVLASSALYA 219
           PL ++++ +     Q V   +W N+      WT  L+   +SAL+A
Sbjct: 395 PLCNSVTFSNFGYKQCVENRKWQNKVIQKFLWTGGLV---TSALFA 437


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 119 SIILFIPLMLINGEMTVLMNYTNFQSTYF 147
           +I+ F+ +++I  EMT      NF ST+F
Sbjct: 338 AIVTFL-IVMIQFEMTQNSTNINFVSTFF 365


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 9   IMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILL 49
           ++Y+  I T    LK      + +  S+ T FN +F WI+L
Sbjct: 85  LLYSKQIVT---ILKKTKSNIFILKESVDT-FNDIFGWIIL 121


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.326    0.138    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,054
Number of Sequences: 317
Number of extensions: 2552
Number of successful extensions: 23
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 15
length of query: 242
length of database: 114,650
effective HSP length: 55
effective length of query: 187
effective length of database: 97,215
effective search space: 18179205
effective search space used: 18179205
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 42 (21.0 bits)