Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000854-TA|BGIBMGA000854-PA|IPR004853|Protein of unknown
function DUF250
(242 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces... 87 2e-18
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 38 0.002
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ... 35 0.012
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 32 0.066
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 29 0.61
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 4.3
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 26 5.7
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 26 5.7
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar... 25 10.0
>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 87.0 bits (206), Expect = 2e-18
Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 8/223 (3%)
Query: 13 LMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCAFIIFGFYLGV 72
L I + CL V V FY + R L F ++ S++LL+Q T C ++ GF GV
Sbjct: 163 LGIVSKTYCLAFVPVSFYQISRGLLLPFTILLSFVLLKQKTRLFPFGGCLLVMLGFGFGV 222
Query: 73 DQENL---LGTIYGVVGSLMLSLYSIFTKKVLPYVNQEVLL-LSYYNNAYSIILFIPLML 128
E+ +G I GV S ++ S+ K YV++ L L Y +A + + L +
Sbjct: 223 RFESHVAPIGIILGVWSSFTTAIESVAVKH---YVHEYPTLDLIYIFSALMSVFCLLLSV 279
Query: 129 INGEMT-VLMNYTNFQSTYFWFQMVIGGLCGFAIGYCTSLQIKVTSPLTHNISGTAKACA 187
+ E+ + Q+ F+ +++ L F + T QIKVTSP+T+ IS +A++
Sbjct: 280 ASLELLHTVQEVVGMQAIKFFIVLILSSLSNFYLNIATFTQIKVTSPVTYMISVSARSIL 339
Query: 188 QTVIATQWYNESKNALWWTSNLIVLASSALYARFKQLEMEVKS 230
QT++A + E+ +++L + LY K+ E V S
Sbjct: 340 QTLLAVAFLGETLYGNRIYGVILILVGTLLYTLAKEHERRVAS 382
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 37.5 bits (83), Expect = 0.002
Identities = 41/231 (17%), Positives = 87/231 (37%), Gaps = 16/231 (6%)
Query: 5 IPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCAFI 64
+PL+I +L + V + ++L+ +F V+ + R S+ +
Sbjct: 74 LPLSIFQIGGHVFGSLATTKIPVSTVHTVKALSPLFTVLAYRFMFRHVYSAMTYFSLVPL 133
Query: 65 IFGFYLGVDQE---NLLGTIYGVVGSLMLSLYSIFTKKVLPYVNQEV---------LLLS 112
FG L E +++G +Y ++ + + +IF K+ L L
Sbjct: 134 TFGVTLACSFELSADIVGLLYALISTCIFVSQNIFGSKIFMEAKSHSTHTKKHYNKLNLL 193
Query: 113 YYNNAYSIILFIPLMLINGEMTVLMNYTNFQSTYFWFQMVIGGLCGFAIGYCTSLQIKVT 172
Y++ + I+ IP+ L L + + ++ GL F + +
Sbjct: 194 LYSSGVAFIVMIPVWLYQEGFAYLPEV----GSPVFLNLIYNGLSHFFQNILAFTLLSII 249
Query: 173 SPLTHNISGTAKACAQTVIATQWYNESKNALWWTSNLIVLASSALYARFKQ 223
SP+ ++I+ K V++ W+ ++ N + + LY R K+
Sbjct: 250 SPVAYSIASLIKRIFVIVVSIIWFQQATNFTQGSGIFLTAIGLWLYDRSKK 300
>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 34.7 bits (76), Expect = 0.012
Identities = 43/243 (17%), Positives = 92/243 (37%), Gaps = 15/243 (6%)
Query: 6 PLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWIL-----LRQATSSRCILC 60
P++ + MI T + L+ + VP Y + ++LT + + + +L + T L
Sbjct: 82 PISFLLVAMIYTASKALQFLSVPVYTIFKNLTIII-IAYGEVLWFGGHVTALTLFSFGLM 140
Query: 61 CAFIIFGFYLGVDQENLL------GTIYGVVGSLMLSLYSIFTKKVLPYVNQEVLLLSYY 114
I + + + G ++ V+ L + + + +K + N +Y
Sbjct: 141 VLSSIVAAWADIQSSSFASQTLNSGYLWMVLNCLTNAAFVLAMRKRIKLTNFRDFDTMFY 200
Query: 115 NNAYSIILFIPLMLINGEMT---VLMNYTNFQSTYFWFQMVIGGLCGFAIGYCTSLQIKV 171
NN SI + + L + + + N+ M I G+ I Y ++ ++V
Sbjct: 201 NNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKFGVLMAMAISGVSSVGISYTSAWCVRV 260
Query: 172 TSPLTHNISGTAKACAQTVIATQWYNESKNALWWTSNLIVLASSALYARFKQLEMEVKSK 231
TS T+++ G + +++ T+ L+ S +YA K + K
Sbjct: 261 TSSTTYSMVGALNKLPLAIAGLVFFDAPITFGSVTAILLGFISGVVYAVAKSQQQRQKDP 320
Query: 232 TPV 234
+
Sbjct: 321 ATI 323
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 32.3 bits (70), Expect = 0.066
Identities = 12/53 (22%), Positives = 33/53 (62%)
Query: 87 SLMLSLYSIFTKKVLPYVNQEVLLLSYYNNAYSIILFIPLMLINGEMTVLMNY 139
+L + ++ K+V+P++ + LL+ + +AY+ + L+ +NG T+++++
Sbjct: 245 NLYKQVLNVIHKRVIPFLQKPNLLMDFLTDAYNSHHAVSLLALNGLFTLMISH 297
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 29.1 bits (62), Expect = 0.61
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 7 LAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVV 43
L+I YT+ N+C+K G+ FYY S +F+VV
Sbjct: 1307 LSICYTI-----NICVKVYGLSFYYFFHSFWNMFDVV 1338
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.2 bits (55), Expect = 4.3
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 63 FIIFGFYLGVDQENLLGTIYGVVGSLMLSLYSIFTK----KVLPYVNQEVLLLSY 113
F I+GF D + + T+ V SLM+ L T K++PY+++ L+Y
Sbjct: 836 FSIYGFLSAFDNKKV--TLPDKVVSLMIELLENLTAVNDPKLIPYISKSYAFLAY 888
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 168 QIKVTSPLTHNISGTAKAC 186
QIK++S HNISG A +C
Sbjct: 624 QIKLSSTEVHNISGKAFSC 642
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 5.7
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 157 CGFAIGYCTSLQIKVTSPLTHNISGTAKACAQTVIATQWYNESKNALWWTSNLIVLASSA 216
C I CT L ++ + G + +T ++NE+ NA ++N A
Sbjct: 76 CNPHITLCTFLALESLKGIQSKWYGYIEYLPKTFNTPLYFNENDNAFLISTNAYSAAQER 135
Query: 217 LYARFKQLEMEVKSKTPVPEEK 238
L+ +K E S P P E+
Sbjct: 136 LHI-WKHEYQEALSLHPSPTER 156
>SPAC17C9.10 |stm1||G-protein coupled receptor
Stm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 76 NLLGTIYGVVGS--LMLSLYSIFTKKVL 101
N+LG+IYG V S L+LS Y I + L
Sbjct: 64 NVLGSIYGNVSSTVLVLSFYYIVSDSTL 91
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.326 0.138 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,053,952
Number of Sequences: 5004
Number of extensions: 41238
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 9
length of query: 242
length of database: 2,362,478
effective HSP length: 71
effective length of query: 171
effective length of database: 2,007,194
effective search space: 343230174
effective search space used: 343230174
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)
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