Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000854-TA|BGIBMGA000854-PA|IPR004853|Protein of unknown
function DUF250
         (242 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05)                200   1e-51
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_34537| Best HMM Match : UPF0005 (HMM E-Value=6.5e-05)               31   0.65 
SB_26679| Best HMM Match : Ion_trans_2 (HMM E-Value=2.4e-10)           30   1.5  
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_1712| Best HMM Match : Peptidase_C14 (HMM E-Value=1.6e-21)          30   2.0  
SB_40146| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-08)                 30   2.0  
SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05)
          Length = 680

 Score =  200 bits (487), Expect = 1e-51
 Identities = 92/191 (48%), Positives = 130/191 (68%), Gaps = 6/191 (3%)

Query: 43  VFSWILLRQATSSRCILCCAFIIFGFYLGVDQE------NLLGTIYGVVGSLMLSLYSIF 96
           + ++++L Q+TS + ++CCA II GF +GVDQE      +  G ++GV+ SL +SL +I+
Sbjct: 468 ICTYVILGQSTSYKAVICCAVIIGGFLMGVDQEGSSGKISYSGVLFGVLASLCVSLNAIY 527

Query: 97  TKKVLPYVNQEVLLLSYYNNAYSIILFIPLMLINGEMTVLMNYTNFQSTYFWFQMVIGGL 156
           TKK +P V+  +  L  YNN  +  LF+PLM + GE+  + ++ N  S YFW  M IGG+
Sbjct: 528 TKKFIPAVDNNIWRLQLYNNFNACFLFLPLMALLGEIGEVAHFPNLSSAYFWLMMTIGGV 587

Query: 157 CGFAIGYCTSLQIKVTSPLTHNISGTAKACAQTVIATQWYNESKNALWWTSNLIVLASSA 216
            G AIGY T LQIKVTSPLTHNISGTAKAC QT+++  +++E+K ALWW SN +VL  S 
Sbjct: 588 FGIAIGYITGLQIKVTSPLTHNISGTAKACVQTIMSVSYFHETKTALWWLSNAMVLGGSM 647

Query: 217 LYARFKQLEME 227
            Y R +  EM+
Sbjct: 648 AYTRVRHSEMK 658


>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1995

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 161  IGYCTSLQIKVT-SPLTHNISGTAKACAQTVIATQWYNESKNALW 204
            +GYC  L++  + SP+ H  + +A AC +T + +    +   A+W
Sbjct: 1770 LGYCLFLELSPSASPICHQYNLSASACYETAVHSTLDRQQSQAIW 1814


>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1925

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 22/113 (19%), Positives = 59/113 (52%), Gaps = 6/113 (5%)

Query: 76   NLLGTIYGVVGSLMLSLYSIFTKKVLPYVN-QEVLLLSYYNNAYSIILFIPLMLINGEMT 134
            +++G +  ++ +L  ++ +IFTKK++  ++   + LLS      ++IL +P+  +  ++ 
Sbjct: 1731 DIVGLMSALLATLTFAVQNIFTKKMMRELHISHLRLLSILARIATVIL-LPIWALY-DLR 1788

Query: 135  VLMNYTNF-QSTYFWFQMV--IGGLCGFAIGYCTSLQIKVTSPLTHNISGTAK 184
             ++ Y++  +    W  +V  I G   F         + + +PL+++++  +K
Sbjct: 1789 KILTYSDLSEENILWLLVVITINGFLNFVQNMVAFTVLSLITPLSYSVATASK 1841


>SB_34537| Best HMM Match : UPF0005 (HMM E-Value=6.5e-05)
          Length = 179

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 63  FIIFGFYLGVDQENLLGTIYGVVGSLMLSLYSIF-TKKVLPYVNQEVLLLSYYNNAYSII 121
           +++FGF     Q ++L   Y V+G+L+ S + +F T  ++  ++ E  +L+  N    II
Sbjct: 106 YLLFGFMFF--QSDILELAYAVLGALLFSAFIVFDTHMLMNKMSPEEYILASINLYMDII 163

Query: 122 -LFIPLMLI 129
            LFI ++ I
Sbjct: 164 NLFIQILKI 172


>SB_26679| Best HMM Match : Ion_trans_2 (HMM E-Value=2.4e-10)
          Length = 366

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 93  YSIFTKKVLPYVNQEVLLLSYYNNAYSIILFIPLMLINGEMTVLMNYTNFQSTYFWF 149
           Y  F+K+VL + + + LL      A+S++    + ++ G  T L  +T  +S Y WF
Sbjct: 201 YVAFSKRVLGHESCQRLLPRCLAIAFSMVTIF-ICIMGGVQTYLDEWTFLESVYCWF 256


>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 88  LMLSLYSIFTKKVLPYVNQEVLLLSYYNNAYSIILFIPLMLINGEMTVLMNYTNFQSTYF 147
           ++LSL++     V+P++N   LL+ Y  ++Y+I   I L+ +NG + +L++  N     F
Sbjct: 276 VLLSLHN----NVIPHMNDPKLLMDYLTDSYNIGGAISLLALNG-LFILIHKHNLDYPEF 330

Query: 148 W 148
           +
Sbjct: 331 Y 331


>SB_1712| Best HMM Match : Peptidase_C14 (HMM E-Value=1.6e-21)
          Length = 594

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 190 VIATQWYNESKNALWWTSNLIVL---ASSALYARFKQLEMEVKSKTPVPEEKQSL 241
           +I+T  Y E+K  LWW  + + L   A SA Y  +  ++ E  + T + EEK  L
Sbjct: 539 LISTYVYRENKPRLWWLDHSVALSLGAVSAAYGIYLVVQAEWCNST-ILEEKSPL 592


>SB_40146| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-08)
          Length = 306

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 80  TIYGVVGSLMLSLYSIFTKKVLPYVNQEVLLLSYYNNAYSIILFIPLMLINGEMTVLM 137
           T YGV+      +  IFT  +   V   ++    Y   Y II+ +PL +I+   TV++
Sbjct: 119 TFYGVLIGTPWVIAVIFTVTISVSVFTPLIPWKIYRTLYVIIVLLPLSIISAAYTVII 176


>SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 864

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 45  SWILLRQATSSRCILCCAFIIFGFYLGVDQENLLGTIYGVVGSLMLSLYSIF 96
           S +L +  TSSR +L C+ +   F+  V   + LG   G+V S++++ Y  +
Sbjct: 658 SEVLKKHHTSSRNVLLCSQVFQDFFCAVFLADRLG--QGIVESVLVNDYGFY 707


>SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1324

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 7/69 (10%)

Query: 82  YGVVGSLMLSLYSIFTKKVLPYVNQEVLLLSYYNNAYSIILF----IPLMLINGEMTVLM 137
           YG+VG +   L S +         Q++LLL++    ++ ++       +M ++G + VLM
Sbjct: 513 YGIVGDIFTKLSSSYHVSTN---KQQLLLLAHAQYRFNRLVLETGSTGVMFVHGTINVLM 569

Query: 138 NYTNFQSTY 146
            Y+N+ + +
Sbjct: 570 IYSNYVNNF 578


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.138    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,210,978
Number of Sequences: 59808
Number of extensions: 253451
Number of successful extensions: 788
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 10
length of query: 242
length of database: 16,821,457
effective HSP length: 80
effective length of query: 162
effective length of database: 12,036,817
effective search space: 1949964354
effective search space used: 1949964354
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)