Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000854-TA|BGIBMGA000854-PA|IPR004853|Protein of unknown
function DUF250
         (242 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.63 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.7  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 72  VDQENLLGTIYGVVGSLMLSLYSIFTKKVLPYVNQEVLL-LSYYNNAYSIILFIPLMLIN 130
           VD   ++   Y ++  ++ ++Y++ T+K+    N+   +  + Y      + F+PL    
Sbjct: 812 VDASYMIAFAYPIMLIVVCTVYAVLTRKIPEAFNESKHIGFTMYTTCVIWLAFVPLYFGT 871

Query: 131 GEMTVL 136
           G    L
Sbjct: 872 GNNVAL 877


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 146 YFWFQMVIGGLCGFAIGYC 164
           Y W+  V+G LCG +   C
Sbjct: 524 YPWWSHVLGWLCGLSSMLC 542


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 146 YFWFQMVIGGLCGFAIGYC 164
           Y W+  V+G LCG +   C
Sbjct: 577 YPWWSHVLGWLCGLSSMLC 595


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
          receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 6  PLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTV 39
          PLA M  L+++ + L +   G  +   GRS + V
Sbjct: 19 PLARMLALLVSLHRLSIYSGGSDWRVAGRSESVV 52


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.138    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,910
Number of Sequences: 429
Number of extensions: 2752
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 242
length of database: 140,377
effective HSP length: 56
effective length of query: 186
effective length of database: 116,353
effective search space: 21641658
effective search space used: 21641658
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 43 (21.4 bits)