GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000854-TA|BGIBMGA000854-PA|IPR004853|Protein of unknown
function DUF250
         (242 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    87   2e-18
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    38   0.002
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    35   0.012
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    32   0.066
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    29   0.61 
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   4.3  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    26   5.7  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    26   5.7  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    25   10.0 

>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 87.0 bits (206), Expect = 2e-18
 Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 8/223 (3%)

Query: 13  LMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCAFIIFGFYLGV 72
           L I +   CL  V V FY + R L   F ++ S++LL+Q T       C  ++ GF  GV
Sbjct: 163 LGIVSKTYCLAFVPVSFYQISRGLLLPFTILLSFVLLKQKTRLFPFGGCLLVMLGFGFGV 222

Query: 73  DQENL---LGTIYGVVGSLMLSLYSIFTKKVLPYVNQEVLL-LSYYNNAYSIILFIPLML 128
             E+    +G I GV  S   ++ S+  K    YV++   L L Y  +A   +  + L +
Sbjct: 223 RFESHVAPIGIILGVWSSFTTAIESVAVKH---YVHEYPTLDLIYIFSALMSVFCLLLSV 279

Query: 129 INGEMT-VLMNYTNFQSTYFWFQMVIGGLCGFAIGYCTSLQIKVTSPLTHNISGTAKACA 187
            + E+   +      Q+  F+  +++  L  F +   T  QIKVTSP+T+ IS +A++  
Sbjct: 280 ASLELLHTVQEVVGMQAIKFFIVLILSSLSNFYLNIATFTQIKVTSPVTYMISVSARSIL 339

Query: 188 QTVIATQWYNESKNALWWTSNLIVLASSALYARFKQLEMEVKS 230
           QT++A  +  E+         +++L  + LY   K+ E  V S
Sbjct: 340 QTLLAVAFLGETLYGNRIYGVILILVGTLLYTLAKEHERRVAS 382


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 41/231 (17%), Positives = 87/231 (37%), Gaps = 16/231 (6%)

Query: 5   IPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCAFI 64
           +PL+I         +L    + V   +  ++L+ +F V+    + R   S+        +
Sbjct: 74  LPLSIFQIGGHVFGSLATTKIPVSTVHTVKALSPLFTVLAYRFMFRHVYSAMTYFSLVPL 133

Query: 65  IFGFYLGVDQE---NLLGTIYGVVGSLMLSLYSIFTKKVLPYVNQEV---------LLLS 112
            FG  L    E   +++G +Y ++ + +    +IF  K+                 L L 
Sbjct: 134 TFGVTLACSFELSADIVGLLYALISTCIFVSQNIFGSKIFMEAKSHSTHTKKHYNKLNLL 193

Query: 113 YYNNAYSIILFIPLMLINGEMTVLMNYTNFQSTYFWFQMVIGGLCGFAIGYCTSLQIKVT 172
            Y++  + I+ IP+ L       L        +  +  ++  GL  F         + + 
Sbjct: 194 LYSSGVAFIVMIPVWLYQEGFAYLPEV----GSPVFLNLIYNGLSHFFQNILAFTLLSII 249

Query: 173 SPLTHNISGTAKACAQTVIATQWYNESKNALWWTSNLIVLASSALYARFKQ 223
           SP+ ++I+   K     V++  W+ ++ N    +   +      LY R K+
Sbjct: 250 SPVAYSIASLIKRIFVIVVSIIWFQQATNFTQGSGIFLTAIGLWLYDRSKK 300


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 43/243 (17%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 6   PLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWIL-----LRQATSSRCILC 60
           P++ +   MI T +  L+ + VP Y + ++LT +  + +  +L     +   T     L 
Sbjct: 82  PISFLLVAMIYTASKALQFLSVPVYTIFKNLTIII-IAYGEVLWFGGHVTALTLFSFGLM 140

Query: 61  CAFIIFGFYLGVDQENLL------GTIYGVVGSLMLSLYSIFTKKVLPYVNQEVLLLSYY 114
               I   +  +   +        G ++ V+  L  + + +  +K +   N       +Y
Sbjct: 141 VLSSIVAAWADIQSSSFASQTLNSGYLWMVLNCLTNAAFVLAMRKRIKLTNFRDFDTMFY 200

Query: 115 NNAYSIILFIPLMLINGEMT---VLMNYTNFQSTYFWFQMVIGGLCGFAIGYCTSLQIKV 171
           NN  SI + +   L   + +   +  N+           M I G+    I Y ++  ++V
Sbjct: 201 NNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKFGVLMAMAISGVSSVGISYTSAWCVRV 260

Query: 172 TSPLTHNISGTAKACAQTVIATQWYNESKNALWWTSNLIVLASSALYARFKQLEMEVKSK 231
           TS  T+++ G        +    +++        T+ L+   S  +YA  K  +   K  
Sbjct: 261 TSSTTYSMVGALNKLPLAIAGLVFFDAPITFGSVTAILLGFISGVVYAVAKSQQQRQKDP 320

Query: 232 TPV 234
             +
Sbjct: 321 ATI 323


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 32.3 bits (70), Expect = 0.066
 Identities = 12/53 (22%), Positives = 33/53 (62%)

Query: 87  SLMLSLYSIFTKKVLPYVNQEVLLLSYYNNAYSIILFIPLMLINGEMTVLMNY 139
           +L   + ++  K+V+P++ +  LL+ +  +AY+    + L+ +NG  T+++++
Sbjct: 245 NLYKQVLNVIHKRVIPFLQKPNLLMDFLTDAYNSHHAVSLLALNGLFTLMISH 297


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 5/37 (13%)

Query: 7    LAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVV 43
            L+I YT+     N+C+K  G+ FYY   S   +F+VV
Sbjct: 1307 LSICYTI-----NICVKVYGLSFYYFFHSFWNMFDVV 1338


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 63  FIIFGFYLGVDQENLLGTIYGVVGSLMLSLYSIFTK----KVLPYVNQEVLLLSY 113
           F I+GF    D + +  T+   V SLM+ L    T     K++PY+++    L+Y
Sbjct: 836 FSIYGFLSAFDNKKV--TLPDKVVSLMIELLENLTAVNDPKLIPYISKSYAFLAY 888


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 168 QIKVTSPLTHNISGTAKAC 186
           QIK++S   HNISG A +C
Sbjct: 624 QIKLSSTEVHNISGKAFSC 642


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 157 CGFAIGYCTSLQIKVTSPLTHNISGTAKACAQTVIATQWYNESKNALWWTSNLIVLASSA 216
           C   I  CT L ++    +     G  +   +T     ++NE+ NA   ++N    A   
Sbjct: 76  CNPHITLCTFLALESLKGIQSKWYGYIEYLPKTFNTPLYFNENDNAFLISTNAYSAAQER 135

Query: 217 LYARFKQLEMEVKSKTPVPEEK 238
           L+  +K    E  S  P P E+
Sbjct: 136 LHI-WKHEYQEALSLHPSPTER 156


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 76  NLLGTIYGVVGS--LMLSLYSIFTKKVL 101
           N+LG+IYG V S  L+LS Y I +   L
Sbjct: 64  NVLGSIYGNVSSTVLVLSFYYIVSDSTL 91


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.138    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,053,952
Number of Sequences: 5004
Number of extensions: 41238
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 9
length of query: 242
length of database: 2,362,478
effective HSP length: 71
effective length of query: 171
effective length of database: 2,007,194
effective search space: 343230174
effective search space used: 343230174
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)