Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000854-TA|BGIBMGA000854-PA|IPR004853|Protein of unknown
function DUF250
(242 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05) 200 1e-51
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_34537| Best HMM Match : UPF0005 (HMM E-Value=6.5e-05) 31 0.65
SB_26679| Best HMM Match : Ion_trans_2 (HMM E-Value=2.4e-10) 30 1.5
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_1712| Best HMM Match : Peptidase_C14 (HMM E-Value=1.6e-21) 30 2.0
SB_40146| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-08) 30 2.0
SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05)
Length = 680
Score = 200 bits (487), Expect = 1e-51
Identities = 92/191 (48%), Positives = 130/191 (68%), Gaps = 6/191 (3%)
Query: 43 VFSWILLRQATSSRCILCCAFIIFGFYLGVDQE------NLLGTIYGVVGSLMLSLYSIF 96
+ ++++L Q+TS + ++CCA II GF +GVDQE + G ++GV+ SL +SL +I+
Sbjct: 468 ICTYVILGQSTSYKAVICCAVIIGGFLMGVDQEGSSGKISYSGVLFGVLASLCVSLNAIY 527
Query: 97 TKKVLPYVNQEVLLLSYYNNAYSIILFIPLMLINGEMTVLMNYTNFQSTYFWFQMVIGGL 156
TKK +P V+ + L YNN + LF+PLM + GE+ + ++ N S YFW M IGG+
Sbjct: 528 TKKFIPAVDNNIWRLQLYNNFNACFLFLPLMALLGEIGEVAHFPNLSSAYFWLMMTIGGV 587
Query: 157 CGFAIGYCTSLQIKVTSPLTHNISGTAKACAQTVIATQWYNESKNALWWTSNLIVLASSA 216
G AIGY T LQIKVTSPLTHNISGTAKAC QT+++ +++E+K ALWW SN +VL S
Sbjct: 588 FGIAIGYITGLQIKVTSPLTHNISGTAKACVQTIMSVSYFHETKTALWWLSNAMVLGGSM 647
Query: 217 LYARFKQLEME 227
Y R + EM+
Sbjct: 648 AYTRVRHSEMK 658
>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1995
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 161 IGYCTSLQIKVT-SPLTHNISGTAKACAQTVIATQWYNESKNALW 204
+GYC L++ + SP+ H + +A AC +T + + + A+W
Sbjct: 1770 LGYCLFLELSPSASPICHQYNLSASACYETAVHSTLDRQQSQAIW 1814
>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1925
Score = 32.3 bits (70), Expect = 0.37
Identities = 22/113 (19%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Query: 76 NLLGTIYGVVGSLMLSLYSIFTKKVLPYVN-QEVLLLSYYNNAYSIILFIPLMLINGEMT 134
+++G + ++ +L ++ +IFTKK++ ++ + LLS ++IL +P+ + ++
Sbjct: 1731 DIVGLMSALLATLTFAVQNIFTKKMMRELHISHLRLLSILARIATVIL-LPIWALY-DLR 1788
Query: 135 VLMNYTNF-QSTYFWFQMV--IGGLCGFAIGYCTSLQIKVTSPLTHNISGTAK 184
++ Y++ + W +V I G F + + +PL+++++ +K
Sbjct: 1789 KILTYSDLSEENILWLLVVITINGFLNFVQNMVAFTVLSLITPLSYSVATASK 1841
>SB_34537| Best HMM Match : UPF0005 (HMM E-Value=6.5e-05)
Length = 179
Score = 31.5 bits (68), Expect = 0.65
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 63 FIIFGFYLGVDQENLLGTIYGVVGSLMLSLYSIF-TKKVLPYVNQEVLLLSYYNNAYSII 121
+++FGF Q ++L Y V+G+L+ S + +F T ++ ++ E +L+ N II
Sbjct: 106 YLLFGFMFF--QSDILELAYAVLGALLFSAFIVFDTHMLMNKMSPEEYILASINLYMDII 163
Query: 122 -LFIPLMLI 129
LFI ++ I
Sbjct: 164 NLFIQILKI 172
>SB_26679| Best HMM Match : Ion_trans_2 (HMM E-Value=2.4e-10)
Length = 366
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 93 YSIFTKKVLPYVNQEVLLLSYYNNAYSIILFIPLMLINGEMTVLMNYTNFQSTYFWF 149
Y F+K+VL + + + LL A+S++ + ++ G T L +T +S Y WF
Sbjct: 201 YVAFSKRVLGHESCQRLLPRCLAIAFSMVTIF-ICIMGGVQTYLDEWTFLESVYCWF 256
>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 88 LMLSLYSIFTKKVLPYVNQEVLLLSYYNNAYSIILFIPLMLINGEMTVLMNYTNFQSTYF 147
++LSL++ V+P++N LL+ Y ++Y+I I L+ +NG + +L++ N F
Sbjct: 276 VLLSLHN----NVIPHMNDPKLLMDYLTDSYNIGGAISLLALNG-LFILIHKHNLDYPEF 330
Query: 148 W 148
+
Sbjct: 331 Y 331
>SB_1712| Best HMM Match : Peptidase_C14 (HMM E-Value=1.6e-21)
Length = 594
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 190 VIATQWYNESKNALWWTSNLIVL---ASSALYARFKQLEMEVKSKTPVPEEKQSL 241
+I+T Y E+K LWW + + L A SA Y + ++ E + T + EEK L
Sbjct: 539 LISTYVYRENKPRLWWLDHSVALSLGAVSAAYGIYLVVQAEWCNST-ILEEKSPL 592
>SB_40146| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-08)
Length = 306
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 80 TIYGVVGSLMLSLYSIFTKKVLPYVNQEVLLLSYYNNAYSIILFIPLMLINGEMTVLM 137
T YGV+ + IFT + V ++ Y Y II+ +PL +I+ TV++
Sbjct: 119 TFYGVLIGTPWVIAVIFTVTISVSVFTPLIPWKIYRTLYVIIVLLPLSIISAAYTVII 176
>SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 45 SWILLRQATSSRCILCCAFIIFGFYLGVDQENLLGTIYGVVGSLMLSLYSIF 96
S +L + TSSR +L C+ + F+ V + LG G+V S++++ Y +
Sbjct: 658 SEVLKKHHTSSRNVLLCSQVFQDFFCAVFLADRLG--QGIVESVLVNDYGFY 707
>SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 82 YGVVGSLMLSLYSIFTKKVLPYVNQEVLLLSYYNNAYSIILF----IPLMLINGEMTVLM 137
YG+VG + L S + Q++LLL++ ++ ++ +M ++G + VLM
Sbjct: 513 YGIVGDIFTKLSSSYHVSTN---KQQLLLLAHAQYRFNRLVLETGSTGVMFVHGTINVLM 569
Query: 138 NYTNFQSTY 146
Y+N+ + +
Sbjct: 570 IYSNYVNNF 578
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.326 0.138 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,210,978
Number of Sequences: 59808
Number of extensions: 253451
Number of successful extensions: 788
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 10
length of query: 242
length of database: 16,821,457
effective HSP length: 80
effective length of query: 162
effective length of database: 12,036,817
effective search space: 1949964354
effective search space used: 1949964354
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)
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