GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000854-TA|BGIBMGA000854-PA|IPR004853|Protein of unknown
function DUF250
         (242 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.     27   0.66 
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    27   0.66 
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            25   2.0  
AY553322-1|AAT36323.1|  426|Anopheles gambiae G-protein coupled ...    23   6.1  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    23   8.1  

>DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.
          Length = 377

 Score = 26.6 bits (56), Expect = 0.66
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 201 NALWWTSNLIVLASSALYARFKQLEME 227
           N L WT N+ V      Y++F+ LE+E
Sbjct: 260 NPLEWTGNVTVRKKRKPYSKFQTLELE 286


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 26.6 bits (56), Expect = 0.66
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 185 ACAQTVIATQWYNESKNALWWTSNLIVL 212
           AC  T+   + Y  +K+A WWT  +  L
Sbjct: 257 ACNATMTKRKRYTPNKSAFWWTLEIEAL 284


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 111  LSYYNNAYSIIL-FIPLM-LINGEMTVLMNYTNFQSTYFWFQMVIGGLCGFAI 161
            L YY+N+ ++    IPL  +ING +T      + Q    +  +++ GL GF++
Sbjct: 989  LVYYDNSSTLCTGAIPLENVINGNLTSRKTILSPQPIEGYIPLLVTGLFGFSL 1041


>AY553322-1|AAT36323.1|  426|Anopheles gambiae G-protein coupled
           receptor 4 protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 8/15 (53%), Positives = 13/15 (86%)

Query: 123 FIPLMLINGEMTVLM 137
           F+PLM+I+G  TV++
Sbjct: 253 FLPLMIISGAYTVIL 267


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 182 TAKACAQTVIATQWYNESKNAL--WWTSNLI 210
           TAK  ++     QW NE  N+L   WT  LI
Sbjct: 898 TAKKASRQASMRQWQNEWSNSLNGRWTYLLI 928


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.326    0.138    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,665
Number of Sequences: 2123
Number of extensions: 8753
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 5
length of query: 242
length of database: 516,269
effective HSP length: 62
effective length of query: 180
effective length of database: 384,643
effective search space: 69235740
effective search space used: 69235740
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 47 (23.0 bits)