Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000854-TA|BGIBMGA000854-PA|IPR004853|Protein of unknown
function DUF250
(242 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70750-12|CAA94748.2| 363|Caenorhabditis elegans Hypothetical p... 259 1e-69
AF323969-1|AAK50396.1| 363|Caenorhabditis elegans GDP-fucose tr... 259 1e-69
Z68011-5|CAB60293.1| 332|Caenorhabditis elegans Hypothetical pr... 166 1e-41
Z68004-10|CAB60291.1| 332|Caenorhabditis elegans Hypothetical p... 166 1e-41
U50135-3|AAA93454.1| 329|Caenorhabditis elegans Squashed vulva ... 41 0.001
AF024503-9|AAG24084.1| 327|Caenorhabditis elegans Serpentine re... 31 0.99
AF003130-7|AAO38638.1| 247|Caenorhabditis elegans Dehydrogenase... 31 0.99
Z93389-1|CAB07668.1| 346|Caenorhabditis elegans Hypothetical pr... 30 1.3
AF026215-5|AAB71321.2| 509|Caenorhabditis elegans Hypothetical ... 30 1.3
AL132904-16|CAC35849.1| 340|Caenorhabditis elegans Hypothetical... 30 1.7
AF100672-1|AAC68997.2| 334|Caenorhabditis elegans Hypothetical ... 29 2.3
AF016655-12|AAK31438.3| 1143|Caenorhabditis elegans Guanylyl cyc... 29 2.3
AC024804-6|AAF60746.1| 162|Caenorhabditis elegans Hypothetical ... 29 3.0
U97013-2|AAV58868.1| 190|Caenorhabditis elegans Hypothetical pr... 29 4.0
U97013-1|AAB52340.2| 270|Caenorhabditis elegans Hypothetical pr... 29 4.0
AF026209-6|AAB71281.1| 340|Caenorhabditis elegans Serpentine re... 29 4.0
AL021566-2|CAA16502.1| 283|Caenorhabditis elegans Hypothetical ... 28 5.3
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 27 9.2
U58755-1|AAB00691.3| 403|Caenorhabditis elegans Nematode astaci... 27 9.2
AF025454-8|AAK68370.1| 334|Caenorhabditis elegans Serpentine re... 27 9.2
AC024817-2|AAU87810.1| 520|Caenorhabditis elegans Hypothetical ... 27 9.2
>Z70750-12|CAA94748.2| 363|Caenorhabditis elegans Hypothetical
protein C50F4.14 protein.
Length = 363
Score = 259 bits (635), Expect = 1e-69
Identities = 127/248 (51%), Positives = 169/248 (68%), Gaps = 8/248 (3%)
Query: 3 QVIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCA 62
+V+PL++++ MI+ NNLCLK+VGV FYYVGRSLTTVFNVV ++++L Q TS + I CCA
Sbjct: 102 EVLPLSVVFVAMISFNNLCLKYVGVSFYYVGRSLTTVFNVVCTYLILGQKTSGQAIGCCA 161
Query: 63 FIIFGFYLGVDQENLLGT------IYGVVGSLMLSLYSIFTKKVLPYVNQEVLLLSYYNN 116
IIFGF LGVDQE + GT I+GV+ SL ++L +I+T+KVL V + L+ YNN
Sbjct: 162 LIIFGFLLGVDQEGVTGTLSYTGVIFGVLASLSVALNAIYTRKVLSSVGDCLWRLTMYNN 221
Query: 117 AYSIILFIPLMLINGEMTVLMNYTNFQSTYFWFQMVIGGLCGFAIGYCTSLQIKVTSPLT 176
+++LF+PLML NGE + + T FW M +GG+ GF +GY T QI+ TSPLT
Sbjct: 222 LNALVLFLPLMLFNGEFGAVFYFDKLFDTTFWILMTLGGVFGFMMGYVTGWQIQATSPLT 281
Query: 177 HNISGTAKACAQTVIATQWYNESKNALWWTSNLIVLASSALYARFKQLEMEVKSK--TPV 234
HNISGTAKA AQTV+A WY+E K LWWTSN +VL S +Y ++ M+ K+ +P
Sbjct: 282 HNISGTAKAAAQTVMAVVWYSELKTLLWWTSNFVVLFGSGMYTYVQKRVMDKKNSGASPA 341
Query: 235 PEEKQSLV 242
E K V
Sbjct: 342 SEAKSDKV 349
>AF323969-1|AAK50396.1| 363|Caenorhabditis elegans GDP-fucose
transporter protein.
Length = 363
Score = 259 bits (635), Expect = 1e-69
Identities = 127/248 (51%), Positives = 169/248 (68%), Gaps = 8/248 (3%)
Query: 3 QVIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCA 62
+V+PL++++ MI+ NNLCLK+VGV FYYVGRSLTTVFNVV ++++L Q TS + I CCA
Sbjct: 102 EVLPLSVVFVAMISFNNLCLKYVGVSFYYVGRSLTTVFNVVCTYLILGQKTSGQAIGCCA 161
Query: 63 FIIFGFYLGVDQENLLGT------IYGVVGSLMLSLYSIFTKKVLPYVNQEVLLLSYYNN 116
IIFGF LGVDQE + GT I+GV+ SL ++L +I+T+KVL V + L+ YNN
Sbjct: 162 LIIFGFLLGVDQEGVTGTLSYTGVIFGVLASLSVALNAIYTRKVLSSVGDCLWRLTMYNN 221
Query: 117 AYSIILFIPLMLINGEMTVLMNYTNFQSTYFWFQMVIGGLCGFAIGYCTSLQIKVTSPLT 176
+++LF+PLML NGE + + T FW M +GG+ GF +GY T QI+ TSPLT
Sbjct: 222 LNALVLFLPLMLFNGEFGAVFYFDKLFDTTFWILMTLGGVFGFMMGYVTGWQIQATSPLT 281
Query: 177 HNISGTAKACAQTVIATQWYNESKNALWWTSNLIVLASSALYARFKQLEMEVKSK--TPV 234
HNISGTAKA AQTV+A WY+E K LWWTSN +VL S +Y ++ M+ K+ +P
Sbjct: 282 HNISGTAKAAAQTVMAVVWYSELKTLLWWTSNFVVLFGSGMYTYVQKRVMDKKNSGASPA 341
Query: 235 PEEKQSLV 242
E K V
Sbjct: 342 SEAKSDKV 349
>Z68011-5|CAB60293.1| 332|Caenorhabditis elegans Hypothetical
protein T21B6.5 protein.
Length = 332
Score = 166 bits (404), Expect = 1e-41
Identities = 91/232 (39%), Positives = 138/232 (59%), Gaps = 33/232 (14%)
Query: 4 VIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCAF 63
V+PL+I++ MI+ NNLCL++VGV FYYVGRS+TTVF V+ +++ ++ + C
Sbjct: 103 VLPLSIVFVAMISFNNLCLRNVGVAFYYVGRSITTVFTVILTYVFFGDNSTKGVNVSCLV 162
Query: 64 IIFGFYLGVDQEN-----LLGTIYGVVGSLMLSLYSIFTK-------------------- 98
I+ GF +G DQE+ G +YG+ SL ++L +++TK
Sbjct: 163 ILIGFGIGSDQESQDPLTTSGVLYGMFASLAVALNALYTKSNTMVLVQKFNKQLSQTIKP 222
Query: 99 ------KVLPYVNQEVLLLSYYNNAYSIILFIPLMLINGEMTVLMNYTNFQSTYFWFQMV 152
++LP V + L++YNN +++LF+PL++ING+ + N+ F + FW +
Sbjct: 223 NKYFSHRILPKVGNCIWQLTWYNNILAVLLFLPLIIINGDFGKIWNH--FPTWSFWQLLF 280
Query: 153 IGGLCGFAIGYCTSLQIKVTSPLTHNISGTAKACAQTVIATQWYNESKNALW 204
I G+ GF + Y T QIK TSPLTHNIS TAK+ +QTVIA Y+E K+ LW
Sbjct: 281 ISGIFGFVMNYVTGWQIKATSPLTHNISATAKSASQTVIAVFLYSEVKSYLW 332
>Z68004-10|CAB60291.1| 332|Caenorhabditis elegans Hypothetical
protein T21B6.5 protein.
Length = 332
Score = 166 bits (404), Expect = 1e-41
Identities = 91/232 (39%), Positives = 138/232 (59%), Gaps = 33/232 (14%)
Query: 4 VIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCAF 63
V+PL+I++ MI+ NNLCL++VGV FYYVGRS+TTVF V+ +++ ++ + C
Sbjct: 103 VLPLSIVFVAMISFNNLCLRNVGVAFYYVGRSITTVFTVILTYVFFGDNSTKGVNVSCLV 162
Query: 64 IIFGFYLGVDQEN-----LLGTIYGVVGSLMLSLYSIFTK-------------------- 98
I+ GF +G DQE+ G +YG+ SL ++L +++TK
Sbjct: 163 ILIGFGIGSDQESQDPLTTSGVLYGMFASLAVALNALYTKSNTMVLVQKFNKQLSQTIKP 222
Query: 99 ------KVLPYVNQEVLLLSYYNNAYSIILFIPLMLINGEMTVLMNYTNFQSTYFWFQMV 152
++LP V + L++YNN +++LF+PL++ING+ + N+ F + FW +
Sbjct: 223 NKYFSHRILPKVGNCIWQLTWYNNILAVLLFLPLIIINGDFGKIWNH--FPTWSFWQLLF 280
Query: 153 IGGLCGFAIGYCTSLQIKVTSPLTHNISGTAKACAQTVIATQWYNESKNALW 204
I G+ GF + Y T QIK TSPLTHNIS TAK+ +QTVIA Y+E K+ LW
Sbjct: 281 ISGIFGFVMNYVTGWQIKATSPLTHNISATAKSASQTVIAVFLYSEVKSYLW 332
>U50135-3|AAA93454.1| 329|Caenorhabditis elegans Squashed vulva
protein 7 protein.
Length = 329
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/187 (16%), Positives = 80/187 (42%), Gaps = 5/187 (2%)
Query: 3 QVIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCA 62
+++PL ++Y + + + + +P + V R + + ++ + +L S +
Sbjct: 78 KIMPLPLLYFFNLISGLGGTQMINLPMFTVLRRFSILMTMILEFYILNVKASKAVKISVG 137
Query: 63 FIIFGFYLGVDQE---NLLGTIYGVVGSLMLSLYSIFTKKVLPYVNQEVLLLSYYNNAYS 119
+I G ++ + + LG + ++ + ++TK+ L + L +YN +
Sbjct: 138 LMIGGSFIAAIYDLSFDALGYTMIFINNICTAALGVYTKQKLDAKDLGKYGLMFYNCLFM 197
Query: 120 IILFIPLMLINGEMTVLMNY--TNFQSTYFWFQMVIGGLCGFAIGYCTSLQIKVTSPLTH 177
++ + ++ G++ ++ ++ ++ W ++ +CGF + Y L S LT
Sbjct: 198 LLPALCVVQYTGDLDRAYSFMLSDSMTSSVWTCFLLSCICGFVLNYSLVLCTHHNSALTT 257
Query: 178 NISGTAK 184
G K
Sbjct: 258 TCVGPIK 264
>AF024503-9|AAG24084.1| 327|Caenorhabditis elegans Serpentine
receptor, class h protein266 protein.
Length = 327
Score = 30.7 bits (66), Expect = 0.99
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 109 LLLSYYNNAYSIILFIPLMLINGEMTVLMNY 139
+LLS +N S++ FIP +L E + MNY
Sbjct: 127 VLLSTFNYTLSVVFFIPALLTVPEQNMAMNY 157
>AF003130-7|AAO38638.1| 247|Caenorhabditis elegans Dehydrogenases,
short chain protein2, isoform b protein.
Length = 247
Score = 30.7 bits (66), Expect = 0.99
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 48 LLRQATSSRCILCCAFIIFGFYLGVDQENLLGTIYGV 84
L + SR + C F++F F+L + Q+ LG + V
Sbjct: 134 LFQHHMKSRALNACTFLVFCFFLTIQQQTYLGRVVTV 170
>Z93389-1|CAB07668.1| 346|Caenorhabditis elegans Hypothetical
protein T13F3.1 protein.
Length = 346
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 84 VVGSLMLSLYSIFTKKVLPYVNQEVLLLSYYNNAYSIILFIPLMLINGEMTVLMNYTNFQ 143
++ S+++ L F+ K + ++ +S + YSI+ I L + +VL+ + N +
Sbjct: 22 ILNSILVYLILKFSPKKIGSYKYLMIYISLFQIFYSIMDSISLPTYHAYSSVLLVFKNIR 81
Query: 144 -------STYFWFQMVIGGLCGFAIG 162
S ++W +V G GF +G
Sbjct: 82 DQPYIPISVHYWLLVVYSGCYGFCMG 107
>AF026215-5|AAB71321.2| 509|Caenorhabditis elegans Hypothetical
protein F09G2.3 protein.
Length = 509
Score = 30.3 bits (65), Expect = 1.3
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 14/122 (11%)
Query: 59 LCCAFIIFGFYLGV-DQENLLGTIYGVVGSLMLSLYSIFT-----------KKVLPYVNQ 106
+C AF++ GF +G D N GT G + Y + T V+ + +
Sbjct: 34 ICLAFLL-GFGMGANDVANAFGTSVGSKALTLFQAYCLATIFETLGAVLVGYNVIDTMRR 92
Query: 107 EVLLLSYYNNAYSIILFIPLMLINGEMTVLMNYTNFQSTYFWFQMVIGGLCGFAIGYCTS 166
V+ ++ YNN+ + + ++ G T L+ T Q V+G GF+I C
Sbjct: 93 GVVDVAVYNNSAGDFMVGQVAVLGGTATWLLIATCLQLPVSTTHAVVGATLGFSIA-CKG 151
Query: 167 LQ 168
Q
Sbjct: 152 FQ 153
>AL132904-16|CAC35849.1| 340|Caenorhabditis elegans Hypothetical
protein Y111B2A.20 protein.
Length = 340
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 111 LSYYNNAYSIILFIPLMLINGEMTVLMNYTNFQSTYFWFQMVIGGLCGFAIG-YCTSLQI 169
+ +Y N YS + +L+ GE+ + FW + G +G +C I
Sbjct: 211 MMFYTNLYSSLYLSAGLLVTGELWSFFYFVQRHPYVFW--DLTGLAIASCLGQWCIFKTI 268
Query: 170 KVTSPLTHNISGTAKACAQTVIATQWYN 197
+ SPLT +I T + +I+ + N
Sbjct: 269 EEFSPLTCSIVTTTRKLFTIIISVLFMN 296
>AF100672-1|AAC68997.2| 334|Caenorhabditis elegans Hypothetical
protein W05E7.2 protein.
Length = 334
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 57 CILCCAFIIFGFYLGVDQEN 76
CILCC ++F FY+ V++ N
Sbjct: 31 CILCCYIVLFPFYVYVNKVN 50
>AF016655-12|AAK31438.3| 1143|Caenorhabditis elegans Guanylyl
cyclase protein 19 protein.
Length = 1143
Score = 29.5 bits (63), Expect = 2.3
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 7/126 (5%)
Query: 78 LGTIYGVVGSLMLSLYSIFTKKVLPYVNQEV--LLLSYYNNAYSIILFIPLM--LINGEM 133
L I + G+L L+ + + + N V L+L N+ Y F+ L L G +
Sbjct: 357 LNDIDKINGALQLNFAGLTGEVSINANNSRVPKLMLYALNDKYDQASFMNLTYSLNGGAV 416
Query: 134 TVLMNYTNFQSTYFWF---QMVIGGLCGFAIGYCTSLQIKVTSPLTHNISGTAKACAQTV 190
+V + YTN S ++W+ + + +CGFA C + L I G V
Sbjct: 417 SVSLAYTNEASLWYWYGGKRPLSVPVCGFAGTDCPQSFVDQYGALVFAIGGVLIFAMLFV 476
Query: 191 IATQWY 196
I +Y
Sbjct: 477 ITCFFY 482
>AC024804-6|AAF60746.1| 162|Caenorhabditis elegans Hypothetical
protein Y51H7BR.3 protein.
Length = 162
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Query: 113 YYNNAYSIILFIPL--MLINGEMT-----VLMNYTNFQSTYFWFQMV 152
Y+N+ ++I F L +L++G+M +L N+ NF S ++ +MV
Sbjct: 113 YFNSVITLIYFCKLIILLVSGDMVTSILCILCNFVNFFSVFYEIKMV 159
>U97013-2|AAV58868.1| 190|Caenorhabditis elegans Hypothetical
protein F28H1.4b protein.
Length = 190
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 57 CILCCAFIIFG--FYLGVDQENLLGTIYGVVGSLMLSLYSIFTKKVLPYVNQEVLLLSYY 114
C+L F++ G +Y GV + ++ V + +L+LY LP +N ++ Y
Sbjct: 54 CLLTFIFVMMGPAYYTGVGWATFVSSVGIFVTTSLLTLYLFRVVDTLPSINW-IVCEMVY 112
Query: 115 NNAYSIILFI 124
A+++ FI
Sbjct: 113 CFAWTVFFFI 122
>U97013-1|AAB52340.2| 270|Caenorhabditis elegans Hypothetical
protein F28H1.4a protein.
Length = 270
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 57 CILCCAFIIFG--FYLGVDQENLLGTIYGVVGSLMLSLYSIFTKKVLPYVNQEVLLLSYY 114
C+L F++ G +Y GV + ++ V + +L+LY LP +N ++ Y
Sbjct: 134 CLLTFIFVMMGPAYYTGVGWATFVSSVGIFVTTSLLTLYLFRVVDTLPSINW-IVCEMVY 192
Query: 115 NNAYSIILFI 124
A+++ FI
Sbjct: 193 CFAWTVFFFI 202
>AF026209-6|AAB71281.1| 340|Caenorhabditis elegans Serpentine
receptor, class j protein24 protein.
Length = 340
Score = 28.7 bits (61), Expect = 4.0
Identities = 23/112 (20%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 64 IIFGFYLGVDQENLLGTIYGVVGSLMLSLYSIFTKKVLPYV-----NQEVLLLSYYNNAY 118
+I Y G + + +I G++ + +LS+ S+ ++ ++ LL+S
Sbjct: 181 MIIALYEGGSEIVIRKSIIGIIANTILSVASVLIYTIIGFLIIRKLRSNTLLMSKKTKRL 240
Query: 119 SIILFIPLMLINGEMTVLMNYTNFQSTYF-WFQMVIGGLCGFAIGYCTSLQI 169
L L++ +V+ ++ +F T W++++IG G A+ Y +S+ +
Sbjct: 241 QDQLMRALIV----QSVIPSFVSFAPTMASWYELIIGFHLGRAVYYTSSVLV 288
>AL021566-2|CAA16502.1| 283|Caenorhabditis elegans Hypothetical
protein F08E10.2 protein.
Length = 283
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 55 SRCILCCAFIIFGFYLGVDQENLL--GTIYGVVGSLMLSLYSIFTKKV---LPYVNQEVL 109
S IL C F+I+ + LG +L T ++ S+++ ++S + P +N E +
Sbjct: 186 SLVILSCRFVIWNYSLGAQSNSLFTKATRIALIDSIIIFIFSFLPSAISQQFPSINFETV 245
Query: 110 --LLSYYNNAYSIILFIPLMLI 129
+++ + N I LFI +++
Sbjct: 246 GPIMTMFKN---IGLFIEALIV 264
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical
protein F46C3.3 protein.
Length = 2557
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 39 VFNVVFSWILLRQATSSRCILCCAFIIFGFYLGVDQENLLGTIYGVVGSLMLSLYSIFTK 98
++ +F W+L R +C L I + G ++ N G ++ S+ + ++F K
Sbjct: 328 IYEELFKWVLNRIGLQLKCSLHTGVISILDHYGFEKYNNNGVEEFLINSVNERIENLFVK 387
Query: 99 KVLPYVNQEVLLLSYYNNAYSIILFIPLMLINGEMTVLM 137
+ +Q L+ Y + S+ +P + NG+ L+
Sbjct: 388 HC--FHDQ---LIDYAKDGISVDYKVPNSIENGKTVELL 421
>U58755-1|AAB00691.3| 403|Caenorhabditis elegans Nematode astacin
protease protein 8 protein.
Length = 403
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 147 FWFQMVIGGLCGFAIGYCTSLQIKVTSPLTHNISGT 182
F+F+ ++ C + GYCT ++ N S T
Sbjct: 355 FFFEQIMKEFCSLSCGYCTPKALQTAKASPPNYSNT 390
>AF025454-8|AAK68370.1| 334|Caenorhabditis elegans Serpentine
receptor, class i protein62 protein.
Length = 334
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 46 WILLRQ-ATSSRCILCCAFIIFGFYLGVDQENLLGTIYGVVGSL 88
W LL Q ATSS C++ F +F +G+D ++ V+ L
Sbjct: 240 WSLLAQFATSSVCVVPPIFFVFVVLIGIDGAQVIVEFLLVIACL 283
>AC024817-2|AAU87810.1| 520|Caenorhabditis elegans Hypothetical
protein Y54G2A.38 protein.
Length = 520
Score = 27.5 bits (58), Expect = 9.2
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 52 ATSSRCILCCAFIIFGFYLGVDQENLLGTIYGVVGSLMLSLYSIFTKKVLPYVNQEVLLL 111
+T + ++ CA F L D+ IYG +G L+L +S F PY+ ++L+
Sbjct: 223 STLASSVIQCAAAGNTFLLQFDRN----AIYGQIGQLLLPFFSDFLTISQPYI---LILM 275
Query: 112 SYYNNAYSIILFIPLMLING 131
S N + I L + NG
Sbjct: 276 SSKNLLTWLNSMITLRIPNG 295
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.326 0.138 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,576,457
Number of Sequences: 27539
Number of extensions: 216016
Number of successful extensions: 789
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 772
Number of HSP's gapped (non-prelim): 24
length of query: 242
length of database: 12,573,161
effective HSP length: 79
effective length of query: 163
effective length of database: 10,397,580
effective search space: 1694805540
effective search space used: 1694805540
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)
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