Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000853-TA|BGIBMGA000853-PA|IPR011051|Cupin, RmlC-type,
IPR003101|Coactivator CBP, KIX, IPR001487|Bromodomain,
IPR010303|Protein of unknown function DUF902, CREBbp,
IPR009255|Transcriptional coactivation, IPR000433|Zinc finger,
ZZ-type, IPR000197|Zinc finger, TAZ-type, IPR001965|Zinc finger,
PHD-type, IPR006089|Acyl-CoA dehydrogenase
         (1573 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    27   1.0  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   7.2  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 305 NNLVGPPGPSP-NQMGQTSNGSVGSVGAPGMSPFGSLTSPAPHYAQTNGPAPLASPTHQH 363
           N+L GP  P+      +   GSVG VG    S  G+      +    N P  + S + Q 
Sbjct: 133 NSLTGPVRPAACTPDSRVGYGSVGLVGGDPASSPGAAAGRTGNSLSWNNPCSINSTSSQP 192

Query: 364 IDT 366
           + T
Sbjct: 193 VGT 195


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
            protein protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 1208 QSIQRCIQSLVHACQCRDANCRLPSCQKMKRVVTHTKICKRKTKGDCP-ICKQL 1260
            Q  +R   + VH  +    +C +P C K+    +H K   R   G+ P +C  L
Sbjct: 297  QEAERLGPAGVHLRKKNIHSCHIPGCGKVYGKTSHLKAHLRWHTGERPFVCNWL 350


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 282,761
Number of Sequences: 317
Number of extensions: 11698
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 2
length of query: 1573
length of database: 114,650
effective HSP length: 66
effective length of query: 1507
effective length of database: 93,728
effective search space: 141248096
effective search space used: 141248096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)