Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000853-TA|BGIBMGA000853-PA|IPR011051|Cupin, RmlC-type,
IPR003101|Coactivator CBP, KIX, IPR001487|Bromodomain,
IPR010303|Protein of unknown function DUF902, CREBbp,
IPR009255|Transcriptional coactivation, IPR000433|Zinc finger,
ZZ-type, IPR000197|Zinc finger, TAZ-type, IPR001965|Zinc finger,
PHD-type, IPR006089|Acyl-CoA dehydrogenase
         (1573 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    29   0.30 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        29   0.40 
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           25   4.9  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 29.1 bits (62), Expect = 0.30
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 5/126 (3%)

Query: 617 LSEVFEQEIDPVMQSLGYCCGRKYTFNPQVLCCYGKQLCTIPRDAKYFSYKNRYTFCQKC 676
           LS  +++ + P +Q   +CCG ++  +   L          P++       N YT  Q  
Sbjct: 70  LSTRYDKRLLPPVQDADFCCGMRWPGDATGLSNRSSTSSNDPKNQYKNQNNNHYTSHQHL 129

Query: 677 FNEIQGDTVTLGDDPLQPQTAIKKDQFKEMKNDHLEQEPFV--MCMDCGRKQHQI--CVL 732
              ++G T+T+    L    A   +   + + + L Q+ +         R Q++    + 
Sbjct: 130 RTHLRG-TLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLNAIH 188

Query: 733 HHDSIW 738
           H+D IW
Sbjct: 189 HYDDIW 194


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 280 TAPLGIRIPSPGIALSMPTARLPF--QNNLVGPPGPSPNQMGQTSNGSVGSVGAPGMSPF 337
           T+P    + S   A ++  A + +  Q+N   P G SP   G +++ S  +     M P+
Sbjct: 32  TSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSSMYPY 91

Query: 338 GSLTSPAPHYAQTNGPAPLA 357
            S  +   H+ Q    A  A
Sbjct: 92  VSAAAAHHHHQQQQAVAAAA 111


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 676 CFNEIQGDTVTLGDDPLQPQTA 697
           C    Q   V+L +DP+QPQ A
Sbjct: 89  CMKTTQAVVVSLYEDPIQPQQA 110


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 342,463
Number of Sequences: 429
Number of extensions: 14186
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 4
length of query: 1573
length of database: 140,377
effective HSP length: 67
effective length of query: 1506
effective length of database: 111,634
effective search space: 168120804
effective search space used: 168120804
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)