Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000853-TA|BGIBMGA000853-PA|IPR011051|Cupin, RmlC-type,
IPR003101|Coactivator CBP, KIX, IPR001487|Bromodomain,
IPR010303|Protein of unknown function DUF902, CREBbp,
IPR009255|Transcriptional coactivation, IPR000433|Zinc finger,
ZZ-type, IPR000197|Zinc finger, TAZ-type, IPR001965|Zinc finger,
PHD-type, IPR006089|Acyl-CoA dehydrogenase
(1573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 77 1e-14
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 74 1e-13
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 65 6e-11
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 54 2e-07
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 49 6e-06
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 48 1e-05
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 47 2e-05
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 46 4e-05
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 45 7e-05
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 45 1e-04
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ... 38 0.008
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 32 0.74
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 31 1.3
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 31 1.3
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 31 1.7
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 31 1.7
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 29 3.9
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 29 6.9
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 29 6.9
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 29 6.9
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 29 6.9
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 77.4 bits (182), Expect = 1e-14
Identities = 37/93 (39%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 534 LEQMFRQDPESL--PFRQPVDAQALCIPDYFDIVSKPIDLSTIKSKLDRGVYKDPWEYVD 591
L++++++ ES PF QPVD A PDYFD++ +P+DLSTI+SKL++ Y E+
Sbjct: 264 LKELYKRQYESFAFPFYQPVDPVACDCPDYFDVIKEPMDLSTIQSKLNKNEYSTLEEFES 323
Query: 592 DVWLMFENAWLYNRKNSRVYRYCTKLSEVFEQE 624
D+ LMF N + YN + V+ +L VF+++
Sbjct: 324 DILLMFNNCFTYNPPGTPVHVMGRQLENVFKEK 356
Score = 74.1 bits (174), Expect = 1e-13
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 1/140 (0%)
Query: 486 KQETKLEVKAEIKEEPTESTTDLNNADRGTRKIFVFKPEDLRQALMPTLEQMFRQDPESL 545
K+++ ++K+E ES + +KI +Q + + ++ S
Sbjct: 49 KRDSSGATVGDLKQEEKESMPK-KEPEPTVKKIRGSGMPPPQQKYCLAIVRQLKRTKNSA 107
Query: 546 PFRQPVDAQALCIPDYFDIVSKPIDLSTIKSKLDRGVYKDPWEYVDDVWLMFENAWLYNR 605
PF+ PVD IPDY IV P+DL TI+ KL Y P E++DD+ LMF N +LYN
Sbjct: 108 PFKVPVDPIKQNIPDYPTIVKNPMDLGTIEKKLTSYEYSVPQEFIDDMNLMFSNCFLYNG 167
Query: 606 KNSRVYRYCTKLSEVFEQEI 625
S V L EVFE+++
Sbjct: 168 TESPVGSMGKALQEVFERQL 187
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 74.1 bits (174), Expect = 1e-13
Identities = 36/90 (40%), Positives = 50/90 (55%)
Query: 536 QMFRQDPESLPFRQPVDAQALCIPDYFDIVSKPIDLSTIKSKLDRGVYKDPWEYVDDVWL 595
+ R+ +S+PFR PVD IPDY I+ PIDL T++ K GVY ++DD+ L
Sbjct: 243 RQLRRGRDSIPFRAPVDPVKQNIPDYPTIIKNPIDLGTMQKKFSSGVYSSAQHFIDDMNL 302
Query: 596 MFENAWLYNRKNSRVYRYCTKLSEVFEQEI 625
MF N +LYN S V L FE+++
Sbjct: 303 MFSNCFLYNGTESPVGVMGKNLQATFERQL 332
Score = 60.1 bits (139), Expect = 2e-09
Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 8/123 (6%)
Query: 509 NNADRGTRK-IFVFKPEDLRQAL-----MPTLEQMFRQDPESL--PFRQPVDAQALCIPD 560
+N+ G R+ ++ KP + A L+++ ++ E+ PF +PV+ A PD
Sbjct: 370 SNSSSGIRETMYDLKPHRRKDAAEMKFCQSVLKELLKKQHEAYAYPFYKPVNPTACGCPD 429
Query: 561 YFDIVSKPIDLSTIKSKLDRGVYKDPWEYVDDVWLMFENAWLYNRKNSRVYRYCTKLSEV 620
YF ++ P+DL T+++KL+ Y + D+ LMF+N + +N + V+ KL +
Sbjct: 430 YFKVIKHPMDLGTMQNKLNHNEYASMKAFEADMVLMFKNCYKFNSAGTPVHLMGKKLESI 489
Query: 621 FEQ 623
F++
Sbjct: 490 FQK 492
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 65.3 bits (152), Expect = 6e-11
Identities = 29/97 (29%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 529 ALMPTLEQMFRQDPESLPFRQPVDAQALCIPDYFDIVSKPIDLSTIKSKLDRGVYKDPWE 588
A++ L + P S PF QPV + +PDY++++ P+DLST++ +L Y+ E
Sbjct: 350 AVLEMLFTEMQNHPSSWPFMQPVSKED--VPDYYEVIEHPMDLSTMEFRLRNNQYESVEE 407
Query: 589 YVDDVWLMFENAWLYNRKNSRVYRYCTKLSEVFEQEI 625
++ D +F+N YN N+ Y+ +L + F++++
Sbjct: 408 FIRDAKYIFDNCRSYNDSNTTYYKNADRLEKFFQKKL 444
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 53.6 bits (123), Expect = 2e-07
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 511 ADRGTRKIFVFKPEDLRQALMPTLEQMFRQDPESLPFRQPV---DAQALCIPDYFDIVSK 567
A G + +K + LR+ M E+++ E F + PDY+ I+ +
Sbjct: 1503 ARSGRKNTPSYKQKALRRYCMEIFERLYNLQSEDGRFVNGLFLYPPNRKLYPDYYIIIKR 1562
Query: 568 PIDLSTIKSKLDRGVYKDPWEYVDDVWLMFENAWLYNRKNSRVYRYCTKLSEVFEQEID 626
PI L IK + Y D E + D LMF NA+ YN ++S VY + + ++ I+
Sbjct: 1563 PIALGKIKRNIKNDRYGDVGELIADFMLMFNNAYTYNEEHSIVYEDAKLMEKTLKEVIE 1621
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 48.8 bits (111), Expect = 6e-06
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 546 PFRQPVDAQALCIPDYFDIVSKPIDLSTIKSKLDRGVYKDPWEYVDDVWLMFENAWLYNR 605
PF + D + P+Y+ + +P+ L I+ KL + Y+ ++VDD LMF+NA +N
Sbjct: 236 PFERLPDPRMF--PEYYQAIEQPMALEVIQKKLSKHRYETIEQFVDDFNLMFDNAKSFND 293
Query: 606 KNSRVYR 612
+S+VYR
Sbjct: 294 PSSQVYR 300
Score = 31.5 bits (68), Expect = 0.97
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 567 KPIDLSTIKSKLDRGVYKDPWEYVDDVWLMFENA-WLYNRKNSRVYRYCTKLSEVFEQEI 625
+P L +I+SK+D Y D E+V D+ +F N LY + ++ Y + L E Q++
Sbjct: 57 RPTTLKSIQSKIDEFQYHDFSEFVSDLAYLFINVKALY--EGTQTYSFVQALEEFCIQQL 114
Query: 626 DPVMQSLGY 634
Q GY
Sbjct: 115 -RTFQQQGY 122
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 559 PDYFDIVSKPIDLSTIKSKLDRGVYKDPWEYVDDVWLMFENAWLYNRKNSRVYRYCTKL 617
PDY+ I+ KPI +++K G Y ++ DD+ LM NA YN S VY C+ L
Sbjct: 47 PDYYQIIQKPICYKMMRNKAKTGKYLSMGDFYDDIRLMVSNAQTYNMPGSLVYE-CSVL 104
Score = 47.6 bits (108), Expect = 1e-05
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 498 KEEPTESTTDLNNADR-GTRKIFVFKPEDLRQALMPTLEQMFRQDPESLPFRQPVDAQAL 556
+EE E + +N + GT +I V P+ ++ L E+ Q + + ++ L
Sbjct: 121 EEENEEMESSINEEHKPGTNEIDV--PKVIQNILDALHEEKDEQGRFLIDIFIDLPSKRL 178
Query: 557 CIPDYFDIVSKPIDLSTIKSKLDRGVYKDPWEYVDDVWLMFENAWLYNRKNSRVYRYCTK 616
PDY++I+ P+ + ++ + +G Y +V D+ MF NA YN S VY K
Sbjct: 179 -YPDYYEIIKSPMTIKMLEKRFKKGEYTTLESFVKDLNQMFINAKTYNAPGSFVYEDAEK 237
Query: 617 LSEV 620
LS++
Sbjct: 238 LSQL 241
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/68 (33%), Positives = 33/68 (48%)
Query: 559 PDYFDIVSKPIDLSTIKSKLDRGVYKDPWEYVDDVWLMFENAWLYNRKNSRVYRYCTKLS 618
PDY+ I+ PI L I+ ++ YK D+ MF NA YN + S VY K+
Sbjct: 1102 PDYYMIIKSPIALDAIRKHINGTFYKTLEAMKSDLMTMFNNARTYNEEGSFVYEDANKMQ 1161
Query: 619 EVFEQEID 626
E +I+
Sbjct: 1162 TAMETKIE 1169
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 46.0 bits (104), Expect = 4e-05
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 1126 STLCMLYELHNQGQDKFVYT-CNSCKSHVET-RYHCTVCDDFDLCVPCYEKEGHPHT 1180
S C + + Q F+Y C+ C+ + RY C+VCDD+D+C C H +T
Sbjct: 115 SLTCSVNSMSVSPQSNFMYAICDHCEQPIHNVRYKCSVCDDYDICESCLTDNSHSNT 171
Score = 45.2 bits (102), Expect = 7e-05
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 1146 CNSCKSH--VETRYHCTVCDDFDLCVPCYEKEGHPHTMEKLGLDIDVGSSP 1194
C++C +H V R+HC VC+D+DLC C H H L L ++ +SP
Sbjct: 212 CDNCLAHPIVGPRFHCLVCEDYDLCSSCVSHVHHDH-HSMLRLTREISASP 261
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 1146 CNSCKSHVET-RYHCTVCDDFDLCVPCYEKEGHPHTMEK 1183
CN+C + +HCT C DFD+C CY K+ H K
Sbjct: 62 CNTCLKIIRNDSFHCTKCFDFDVCRDCYAKQAFLHPCPK 100
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 45.2 bits (102), Expect = 7e-05
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 524 EDLRQALMPTLEQMFRQDPESLPFRQPVDAQALCIPDYFDIVSKPIDLSTIKSKLDRGVY 583
E+L +A + ++ SL F V + PDY+ ++ +P+DL TI L Y
Sbjct: 301 EELYEAAEKVVLELRSYTEHSLAFLTKVSKRDA--PDYYTVIKEPMDLGTILRNLKNLHY 358
Query: 584 KDPWEYVDDVWLMFENAWLYN 604
E+V D+ L++ N +LYN
Sbjct: 359 NSKKEFVHDLMLIWSNCFLYN 379
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 44.8 bits (101), Expect = 1e-04
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 9/157 (5%)
Query: 450 KGMRDEIVSQKDSSEPDFMVKQEIKQEIKQEAKQEVKQETKLEVKAEIKEE--PTESTTD 507
K + D++ ++ E K E E ++ + K+ ++ A I+ E PT T
Sbjct: 116 KAVEDQLALEEADKEAK-KAKTEAPVEAANKSLRSRKKTPEIAAPANIEPEVAPTTKTPK 174
Query: 508 LNNADRGTRKIFVFKPEDLRQALMPTLEQMFRQDPESLPFRQPVDAQALCIPDYFDIVSK 567
A K + K + A++P L+ + PF PV+ + PDY +V K
Sbjct: 175 KRAALSNEEKQSLKK---FQSAMLPMLDNISNHR-FGAPFSHPVNRKEA--PDYDSLVYK 228
Query: 568 PIDLSTIKSKLDRGVYKDPWEYVDDVWLMFENAWLYN 604
P DL T+K+ + G + E +V +F N +YN
Sbjct: 229 PQDLRTLKNMIKEGNITEVDELYREVLRIFANCKMYN 265
>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 437
Score = 38.3 bits (85), Expect = 0.008
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 1144 YTCNSCKSHVETRYH--CTVCDDFDLCVPCY 1172
Y CN C + H C C DFDLC+PC+
Sbjct: 6 YHCNVCAQDITRSIHIRCVECVDFDLCIPCF 36
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 31.9 bits (69), Expect = 0.74
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 1146 CNSCKSHVETRYH-----CTVCDDFDLCV-PCYEKEGHPH-TMEKLGLDIDVG 1191
CN C S +T+YH C C ++ C+ Y+ HP ++ +L D G
Sbjct: 348 CNDCNSRCDTKYHFLGHKCNSCHSYNTCISSIYKPLDHPQVSIPRLATAEDAG 400
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 458 SQKDSSEPDFMVKQEIKQEIKQEAKQEVKQETKLEVKAEIKEEPTES 504
S +SSE + + E E+ E++ E + E++ E ++E +EE ES
Sbjct: 83 SDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEESDES 129
Score = 29.9 bits (64), Expect = 3.0
Identities = 16/69 (23%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 456 IVSQKDSSEPDFMVKQEIKQEIKQEAKQEVKQETKLEVKAEIKEEPTESTTDLNNADRGT 515
+ + +DS ++E + E +++++ + E++ E ++E EE +ES + + ++R
Sbjct: 75 VAASEDSESDSESSEEEEETESEEDSEVSDESESESESESE-SEEESESEEESDESERSG 133
Query: 516 RKIFVFKPE 524
F+ KPE
Sbjct: 134 PSSFLKKPE 142
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 31.1 bits (67), Expect = 1.3
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 539 RQDPESLPFRQPVDAQALCIPDYF-DIVSKPIDLSTIKSKLDRGVYKDPWEYVDDVWL-- 595
R DP+ F+ V AL + DIV P + +K KL G+ + + +D+V L
Sbjct: 41 RNDPKKFRFQTLV---ALMLSSQTKDIVLGPT-MRNLKEKLAGGLCLEDIQNIDEVSLNK 96
Query: 596 MFENAWLYNRKNSRVYRYCTKLSEVFEQEIDPVMQSL 632
+ E +NRK + + LSE F+ +I ++ L
Sbjct: 97 LIEKVGFHNRKTIYLKQMARILSEKFQGDIPDTVEDL 133
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/60 (25%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 935 QEWYKKMLDKGIIERIILDYKDILKQAMEDNISSAAELPYFE-G--DFWPNVLEESIKEL 991
Q++ ++ LDKG++ER+++ +++++ + ++S + YF G D + LE++ ++L
Sbjct: 162 QDFRQQFLDKGLVERLVVVNRNMVRVILRGGVASGSGQYYFSIGSIDSFDRKLEDAQRQL 221
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 464 EPDFMVKQEIKQEIKQEAKQEVKQETKLEVKAEIKEE 500
E + K+E ++ K+EA+++VK+ET+ K + +EE
Sbjct: 668 EAEEKAKREAEENAKREAEEKVKRETEENAKRKAEEE 704
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 459 QKDSSEPDFMVKQEIKQEIKQEAKQEVKQETKLEVKAEIKEEPTESTTDLNNADR 513
+K E + K+E ++ K+EA+++ K+E + K E +E+ T + NA R
Sbjct: 647 EKAKREAEEKAKREAEENAKREAEEKAKREAEENAKREAEEKVKRETEE--NAKR 699
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/42 (28%), Positives = 27/42 (64%)
Query: 459 QKDSSEPDFMVKQEIKQEIKQEAKQEVKQETKLEVKAEIKEE 500
+K E + K+E +++ K+EA+++ K+E + + K E +E+
Sbjct: 607 EKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEK 648
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/42 (28%), Positives = 27/42 (64%)
Query: 459 QKDSSEPDFMVKQEIKQEIKQEAKQEVKQETKLEVKAEIKEE 500
+K E + K+E +++ K+EA+++ K+E + + K E +E+
Sbjct: 615 EKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEK 656
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 459 QKDSSEPDFMVKQEIKQEIKQEAKQEVKQETKLEVKAEIKEE 500
+K E + K+E +++ K+EA++ K+E + + K E +E+
Sbjct: 575 EKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEEK 616
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 459 QKDSSEPDFMVKQEIKQEIKQEAKQEVKQETKLEVKAEIKEE 500
+K E + K+E ++ K+EA+++ K+E + + K E +E+
Sbjct: 583 EKAKREAEEKAKREAEENAKREAEEKAKREAEEKAKREAEEK 624
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/42 (28%), Positives = 27/42 (64%)
Query: 459 QKDSSEPDFMVKQEIKQEIKQEAKQEVKQETKLEVKAEIKEE 500
+K E + K+E +++ K+EA+++ K+E + + K E +E+
Sbjct: 591 EKAKREAEENAKREAEEKAKREAEEKAKREAEEKAKREAEEK 632
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 459 QKDSSEPDFMVKQEIKQEIKQEAKQEVKQETKLEVKAEIKE 499
+K E + K+E +++ K+EA+++ K+E + + K E +E
Sbjct: 623 EKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEE 663
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 459 QKDSSEPDFMVKQEIKQEIKQEAKQEVKQETKLEVKAEIKEE 500
+K E + K+E +++ K+EA+++ K+E + K E +E+
Sbjct: 631 EKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEK 672
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 454 DEIVSQKDSSEPDFMVKQEIKQEIKQEAKQEVKQETKLEVKAEIKEEPTE 503
+E +KD+ + ++Q I+++ + EAK++ +++ +LE + K E E
Sbjct: 520 EEASQRKDAIK--LAIQQRIQEKAEAEAKRKAEEKARLEAEENAKREAEE 567
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/42 (28%), Positives = 27/42 (64%)
Query: 459 QKDSSEPDFMVKQEIKQEIKQEAKQEVKQETKLEVKAEIKEE 500
+K E + K+E +++ K+EA+++ K+E + + K E +E+
Sbjct: 551 EKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEK 592
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 459 QKDSSEPDFMVKQEIKQEIKQEAKQEVKQETKLEVKAEIKE 499
+K E + K+E +++ K+EA++ K+E + + K E +E
Sbjct: 639 EKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEE 679
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 312 GPSPNQMGQTSNGSVGSVGAPGMSPFGSLTSPAPHYAQTNGPAP 355
GP+P G + G V + G P M P GS+ S P A+ P
Sbjct: 524 GPAPGYPGMNARGPVPAQGRPMMMP-GSVPSAGPAEAEAVPAVP 566
Score = 28.7 bits (61), Expect = 6.9
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 455 EIVSQKDSS-EPDFMVKQE-IKQEIKQEAKQEVKQETKLEVKAEIKE---EPTESTTDLN 509
++ Q D++ E D E ++ K+E+ ET+ E KAE E EP+EST+
Sbjct: 5 DLKKQADAAVESDVNTNNEAVESSTKEESSNTPSTETQPEKKAEEPEAAAEPSESTSTPT 64
Query: 510 NA 511
NA
Sbjct: 65 NA 66
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 28.7 bits (61), Expect = 6.9
Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 471 QEIKQEIKQEAKQEVKQETKLEVK--AEIKEEPTESTTDLNNADRGTRKIFVFKPEDLRQ 528
++ + E+K + ++EVK+E++ E + A ++ +P E + A G K + +K D Q
Sbjct: 58 EDERLEVKNKVQEEVKEESEDEEEDPAMLRADPKEWKQQDHYAVLGLSK-YRYK-ADTEQ 115
Query: 529 ALMPTLEQMFRQDPESLPFRQPV--DAQALCIPDYFDIVSKPI 569
L+++ + P+ + D+ CI ++I+S P+
Sbjct: 116 IKKAHLKKVLKHHPDKKAASGNINDDSFFKCIQKAYEILSDPV 158
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 28.7 bits (61), Expect = 6.9
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 450 KGMRDEIVSQKDSSEPDFMVKQE--IKQEIKQEAKQEVKQETKLEVKAEIKEEPTESTTD 507
K D V Q S F +Q+ KQ I ++AKQE++ KLE K KEE T + D
Sbjct: 392 KSQVDSAVEQLKSRIAHFKEQQDSVTKQRI-EKAKQEIE---KLEAKYNSKEEKTLTEAD 447
Query: 508 L 508
+
Sbjct: 448 M 448
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 28.7 bits (61), Expect = 6.9
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Query: 452 MRDEIVSQKDSSEPDFMVKQEIKQEIKQEAKQEVKQETKLEVKA-EIKEEPTESTTDLNN 510
+R + S + F Q +Q + +++ E L + ++KE+ TES D N
Sbjct: 262 LRKKSPHDSTSRKASFRFVQSDQQPARNIVTSDIQNEKSLLLLIRDLKEKQTESFQDWNE 321
Query: 511 ADRGTRKIFVFKPEDLRQALMPTLE 535
D K P R +P LE
Sbjct: 322 VDFLQLKGLEISPPPTRPKFIPELE 346
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 28.7 bits (61), Expect = 6.9
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 1130 MLYELHNQGQDKFVYTCNSC---KSHVETRYHCTVCDDFDLCVPCYEKEGHPHTMEKLGL 1186
++Y N G D C C +H H ++ + C G P + L
Sbjct: 107 VIYRCKNCGLDNTCVLCAPCFHATNHEGHETHVSISTSYSGICDC----GDPEAWN-VDL 161
Query: 1187 DIDVGSSPGDMKQANPQEARKQSIQRCIQSLVH 1219
+ + + P D +Q P+E +Q I++ +H
Sbjct: 162 NCKIHNVPDDEEQKKPEEVIPLELQHSIRTTIH 194
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.135 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,414,385
Number of Sequences: 5004
Number of extensions: 217048
Number of successful extensions: 679
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 617
Number of HSP's gapped (non-prelim): 64
length of query: 1573
length of database: 2,362,478
effective HSP length: 82
effective length of query: 1491
effective length of database: 1,952,150
effective search space: 2910655650
effective search space used: 2910655650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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