Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000852-TA|BGIBMGA000852-PA|undefined
         (342 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.2  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   5.6  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   5.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   9.8  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 190 NVNKQLPTLMGNSHHGTHHPHAQ 212
           N N        + HH  HH HAQ
Sbjct: 311 NNNNAATNNQNHHHHAGHHIHAQ 333


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 53  PGVPGPKPPAQGLGPGQMAPQQQLNGDDPAAA 84
           P V G +  + G G G ++PQ Q     P  A
Sbjct: 89  PTVSGSEMSSPGAGSGNLSPQIQTQVARPPPA 120


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 53  PGVPGPKPPAQGLGPGQMAPQQQLNGDDPAAA 84
           P V G +  + G G G ++PQ Q     P  A
Sbjct: 89  PTVSGSEMSSPGAGSGNLSPQIQTQVARPPPA 120


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 140 MPNTSHPNQLHSTMPMSSIQGGMNVT 165
           + N    N L S+ P SSI GG++ +
Sbjct: 73  LTNNVPSNGLSSSGPFSSIGGGISAS 98


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.132    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,288
Number of Sequences: 317
Number of extensions: 3099
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 342
length of database: 114,650
effective HSP length: 57
effective length of query: 285
effective length of database: 96,581
effective search space: 27525585
effective search space used: 27525585
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)